Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC079684.1-201ENST00000621405 437 ntBASIC4.12□□□□□ -1.75
TDP1Q9NUW8 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.12□□□□□ -1.75
TDP1Q9NUW8 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
TDP1Q9NUW8 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.12□□□□□ -1.75
TDP1Q9NUW8 AL137003.2-201ENST00000606924 2538 ntBASIC4.12□□□□□ -1.75
TDP1Q9NUW8 API5P2-201ENST00000397055 1498 ntBASIC4.11□□□□□ -1.75
TDP1Q9NUW8 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.11□□□□□ -1.75
TDP1Q9NUW8 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.11□□□□□ -1.75
TDP1Q9NUW8 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.11□□□□□ -1.75
TDP1Q9NUW8 XIAPP3-201ENST00000312918 795 ntBASIC4.11□□□□□ -1.75
TDP1Q9NUW8 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.11□□□□□ -1.75
TDP1Q9NUW8 RNA5SP399-201ENST00000364003 117 ntBASIC4.11□□□□□ -1.75
TDP1Q9NUW8 RNU4-20P-201ENST00000365601 151 ntBASIC4.11□□□□□ -1.75
TDP1Q9NUW8 RNU6-332P-201ENST00000391193 108 ntBASIC4.11□□□□□ -1.75
TDP1Q9NUW8 AL121834.1-202ENST00000404494 277 ntBASIC4.11□□□□□ -1.75
TDP1Q9NUW8 RPL23AP48-201ENST00000406913 488 ntBASIC4.11□□□□□ -1.75
TDP1Q9NUW8 SNORA3.3-201ENST00000408712 125 ntBASIC4.11□□□□□ -1.75
TDP1Q9NUW8 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC4.11□□□□□ -1.75
TDP1Q9NUW8 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
TDP1Q9NUW8 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC4.11□□□□□ -1.75
TDP1Q9NUW8 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC4.11□□□□□ -1.75
TDP1Q9NUW8 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC4.11□□□□□ -1.75
TDP1Q9NUW8 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC4.11□□□□□ -1.75
TDP1Q9NUW8 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC4.11□□□□□ -1.75
TDP1Q9NUW8 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC4.11□□□□□ -1.75
TDP1Q9NUW8 AP006587.4-201ENST00000526053 529 ntBASIC4.11□□□□□ -1.75
TDP1Q9NUW8 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
TDP1Q9NUW8 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC4.11□□□□□ -1.75
TDP1Q9NUW8 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC4.11□□□□□ -1.75
TDP1Q9NUW8 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC4.11□□□□□ -1.75
TDP1Q9NUW8 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.11□□□□□ -1.75
TDP1Q9NUW8 AC005951.2-201ENST00000576282 495 ntBASIC4.11□□□□□ -1.75
TDP1Q9NUW8 AC011712.1-201ENST00000588959 234 ntBASIC4.11□□□□□ -1.75
TDP1Q9NUW8 AC010133.1-201ENST00000615809 842 ntBASIC4.11□□□□□ -1.75
TDP1Q9NUW8 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC4.11□□□□□ -1.75
TDP1Q9NUW8 AL161912.2-201ENST00000565707 3007 ntBASIC4.11□□□□□ -1.75
TDP1Q9NUW8 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
TDP1Q9NUW8 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
TDP1Q9NUW8 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.11□□□□□ -1.75
TDP1Q9NUW8 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
TDP1Q9NUW8 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
TDP1Q9NUW8 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
TDP1Q9NUW8 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
TDP1Q9NUW8 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
TDP1Q9NUW8 AC073544.1-201ENST00000600110 1595 ntBASIC4.1□□□□□ -1.75
TDP1Q9NUW8 AC092326.2-201ENST00000624772 1561 ntBASIC4.1□□□□□ -1.75
TDP1Q9NUW8 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
TDP1Q9NUW8 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC4.1□□□□□ -1.75
TDP1Q9NUW8 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC4.1□□□□□ -1.75
TDP1Q9NUW8 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
TDP1Q9NUW8 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.1□□□□□ -1.75
TDP1Q9NUW8 RNA5SP124-201ENST00000362739 110 ntBASIC4.1□□□□□ -1.75
TDP1Q9NUW8 RN7SKP44-201ENST00000363602 316 ntBASIC4.1□□□□□ -1.75
TDP1Q9NUW8 MIR514A2-201ENST00000385131 88 ntBASIC4.1□□□□□ -1.75
TDP1Q9NUW8 MIR514A3-201ENST00000385132 88 ntBASIC4.1□□□□□ -1.75
TDP1Q9NUW8 CD3D-202ENST00000392884 476 ntTSL 2 BASIC4.1□□□□□ -1.75
TDP1Q9NUW8 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
TDP1Q9NUW8 RAB9AP3-201ENST00000412737 573 ntBASIC4.1□□□□□ -1.75
TDP1Q9NUW8 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.1□□□□□ -1.75
TDP1Q9NUW8 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC4.1□□□□□ -1.75
TDP1Q9NUW8 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
TDP1Q9NUW8 RAB9AP1-201ENST00000449393 573 ntBASIC4.1□□□□□ -1.75
TDP1Q9NUW8 RPS24P6-201ENST00000452670 400 ntBASIC4.1□□□□□ -1.75
TDP1Q9NUW8 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC4.1□□□□□ -1.75
TDP1Q9NUW8 MTND1P11-201ENST00000456661 876 ntBASIC4.1□□□□□ -1.75
TDP1Q9NUW8 RPL23AP55-201ENST00000498163 452 ntBASIC4.1□□□□□ -1.75
TDP1Q9NUW8 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC4.1□□□□□ -1.75
TDP1Q9NUW8 VN1R104P-201ENST00000505115 1009 ntBASIC4.1□□□□□ -1.75
TDP1Q9NUW8 MLLT10P2-201ENST00000506434 249 ntBASIC4.1□□□□□ -1.75
TDP1Q9NUW8 Vault.1-201ENST00000516474 102 ntBASIC4.1□□□□□ -1.75
TDP1Q9NUW8 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC4.1□□□□□ -1.75
TDP1Q9NUW8 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC4.1□□□□□ -1.75
TDP1Q9NUW8 AC023050.3-201ENST00000541142 333 ntBASIC4.1□□□□□ -1.75
TDP1Q9NUW8 RAB11AP2-201ENST00000545905 639 ntBASIC4.1□□□□□ -1.75
TDP1Q9NUW8 AC007424.1-203ENST00000554613 687 ntBASIC4.1□□□□□ -1.75
TDP1Q9NUW8 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC4.1□□□□□ -1.75
TDP1Q9NUW8 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC4.1□□□□□ -1.75
TDP1Q9NUW8 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4.1□□□□□ -1.75
TDP1Q9NUW8 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC4.1□□□□□ -1.75
TDP1Q9NUW8 AC008739.3-201ENST00000603262 127 ntBASIC4.1□□□□□ -1.75
TDP1Q9NUW8 uc_338.11-201ENST00000619132 160 ntBASIC4.1□□□□□ -1.75
TDP1Q9NUW8 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC4.1□□□□□ -1.75
TDP1Q9NUW8 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.1□□□□□ -1.75
TDP1Q9NUW8 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
TDP1Q9NUW8 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
TDP1Q9NUW8 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC4.1□□□□□ -1.75
TDP1Q9NUW8 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC4.1□□□□□ -1.75
TDP1Q9NUW8 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
TDP1Q9NUW8 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC4.1□□□□□ -1.75
TDP1Q9NUW8 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.75
TDP1Q9NUW8 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
TDP1Q9NUW8 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
TDP1Q9NUW8 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC4.09□□□□□ -1.75
TDP1Q9NUW8 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.09□□□□□ -1.75
TDP1Q9NUW8 Y_RNA.231-201ENST00000364358 102 ntBASIC4.09□□□□□ -1.75
TDP1Q9NUW8 5S_rRNA.1-201ENST00000364415 116 ntBASIC4.09□□□□□ -1.75
TDP1Q9NUW8 RNU6-767P-201ENST00000384132 107 ntBASIC4.09□□□□□ -1.75
TDP1Q9NUW8 SNORA36C-201ENST00000384289 132 ntBASIC4.09□□□□□ -1.75
TDP1Q9NUW8 MIR449B-201ENST00000384995 97 ntBASIC4.09□□□□□ -1.75
TDP1Q9NUW8 PVALB-202ENST00000404171 422 ntTSL 2 BASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 155.7 ms