Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
CHMP1AQ9HD42 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
CHMP1AQ9HD42 TPTE2P4-201ENST00000258589 1605 ntBASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 AC007656.2-201ENST00000624902 4547 ntBASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 RNU6-282P-201ENST00000365357 103 ntBASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 CGA-201ENST00000369582 729 ntTSL 5 BASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 MIR558-201ENST00000384920 94 ntBASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 BTF3L4P3-201ENST00000418879 476 ntBASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 PIGFP2-201ENST00000421400 651 ntBASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 AC012498.1-201ENST00000424037 437 ntBASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 AL358934.1-201ENST00000432346 324 ntBASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 HMGN2P20-201ENST00000437531 273 ntBASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 HIGD1AP11-201ENST00000438361 280 ntBASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 MTCO2P7-201ENST00000446518 666 ntBASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 AC114755.5-201ENST00000447760 831 ntBASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 AC013267.1-201ENST00000458227 267 ntBASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 RNU6-420P-201ENST00000458780 107 ntBASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 RPL32P34-201ENST00000486380 400 ntBASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 KCTD9P5-201ENST00000504141 1170 ntBASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 RN7SKP298-201ENST00000515950 94 ntBASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 RNU6-405P-201ENST00000516637 110 ntBASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 RNU6-928P-201ENST00000516876 104 ntBASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 DUXAP2-201ENST00000519198 589 ntBASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 AC011602.1-201ENST00000546484 331 ntBASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 AMZ2P1-203ENST00000565833 850 ntBASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 AGGF1P4-201ENST00000568249 801 ntBASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 MIR3609-201ENST00000582661 80 ntBASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 AC004832.5-201ENST00000608677 401 ntBASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 AC107294.3-201ENST00000609211 526 ntBASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 Z99129.1-201ENST00000612510 255 ntBASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 AC072046.2-201ENST00000618366 268 ntBASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 AC079684.1-201ENST00000621405 437 ntBASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 AC244100.1-202ENST00000621554 382 ntBASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 AC068880.5-201ENST00000624331 290 ntBASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 OR52H1-202ENST00000641796 1061 ntBASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
CHMP1AQ9HD42 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
CHMP1AQ9HD42 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.1□□□□□ -1.91
CHMP1AQ9HD42 SPRR2C-201ENST00000290702 219 ntBASIC3.1□□□□□ -1.91
CHMP1AQ9HD42 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
CHMP1AQ9HD42 RNU6-1167P-201ENST00000363227 94 ntBASIC3.1□□□□□ -1.91
CHMP1AQ9HD42 RNY1P12-201ENST00000364251 105 ntBASIC3.1□□□□□ -1.91
CHMP1AQ9HD42 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.1□□□□□ -1.91
CHMP1AQ9HD42 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC3.1□□□□□ -1.91
CHMP1AQ9HD42 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC3.1□□□□□ -1.91
CHMP1AQ9HD42 NDUFB1P1-201ENST00000435191 180 ntBASIC3.1□□□□□ -1.91
CHMP1AQ9HD42 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC3.1□□□□□ -1.91
CHMP1AQ9HD42 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.1□□□□□ -1.91
CHMP1AQ9HD42 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.1□□□□□ -1.91
CHMP1AQ9HD42 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.1□□□□□ -1.91
CHMP1AQ9HD42 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC3.1□□□□□ -1.91
CHMP1AQ9HD42 AC010401.1-201ENST00000463867 348 ntBASIC3.1□□□□□ -1.91
CHMP1AQ9HD42 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC3.1□□□□□ -1.91
CHMP1AQ9HD42 HMGN2P13-201ENST00000476476 274 ntBASIC3.1□□□□□ -1.91
CHMP1AQ9HD42 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC3.1□□□□□ -1.91
CHMP1AQ9HD42 RN7SL323P-201ENST00000494712 295 ntBASIC3.1□□□□□ -1.91
CHMP1AQ9HD42 AC110768.1-201ENST00000509222 400 ntBASIC3.1□□□□□ -1.91
CHMP1AQ9HD42 RNU6-352P-201ENST00000516908 107 ntBASIC3.1□□□□□ -1.91
CHMP1AQ9HD42 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC3.1□□□□□ -1.91
CHMP1AQ9HD42 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC3.1□□□□□ -1.91
CHMP1AQ9HD42 PTS-202ENST00000524931 696 ntTSL 3 BASIC3.1□□□□□ -1.91
CHMP1AQ9HD42 AC025884.1-201ENST00000556034 378 ntBASIC3.1□□□□□ -1.91
CHMP1AQ9HD42 RPL21P12-201ENST00000559810 515 ntBASIC3.1□□□□□ -1.91
CHMP1AQ9HD42 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.1□□□□□ -1.91
CHMP1AQ9HD42 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
CHMP1AQ9HD42 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC3.1□□□□□ -1.91
CHMP1AQ9HD42 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.1□□□□□ -1.91
CHMP1AQ9HD42 AC098826.3-201ENST00000603823 466 ntBASIC3.1□□□□□ -1.91
CHMP1AQ9HD42 AC136601.2-201ENST00000604356 474 ntBASIC3.1□□□□□ -1.91
CHMP1AQ9HD42 AC005332.10-201ENST00000612725 619 ntBASIC3.1□□□□□ -1.91
CHMP1AQ9HD42 AC005344.1-201ENST00000613391 459 ntBASIC3.1□□□□□ -1.91
CHMP1AQ9HD42 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC3.1□□□□□ -1.91
CHMP1AQ9HD42 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC3.1□□□□□ -1.91
CHMP1AQ9HD42 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC3.1□□□□□ -1.91
CHMP1AQ9HD42 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.1□□□□□ -1.91
CHMP1AQ9HD42 MIR492-201ENST00000638676 116 ntBASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 97.5 ms