Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC2.96□□□□□ -1.94
NKX3-1Q99801 CENPBD1P1-201ENST00000464061 469 ntBASIC2.96□□□□□ -1.94
NKX3-1Q99801 RPL23AP67-201ENST00000465341 474 ntBASIC2.96□□□□□ -1.94
NKX3-1Q99801 AC010631.1-201ENST00000474150 156 ntBASIC2.96□□□□□ -1.94
NKX3-1Q99801 HSPE1P6-201ENST00000479457 291 ntBASIC2.96□□□□□ -1.94
NKX3-1Q99801 AC025518.1-201ENST00000479856 347 ntBASIC2.96□□□□□ -1.94
NKX3-1Q99801 SNORA70.16-201ENST00000516390 95 ntBASIC2.96□□□□□ -1.94
NKX3-1Q99801 RNU6-405P-201ENST00000516637 110 ntBASIC2.96□□□□□ -1.94
NKX3-1Q99801 AC026403.1-201ENST00000518938 295 ntBASIC2.96□□□□□ -1.94
NKX3-1Q99801 DUXAP2-201ENST00000519198 589 ntBASIC2.96□□□□□ -1.94
NKX3-1Q99801 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
NKX3-1Q99801 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC2.96□□□□□ -1.94
NKX3-1Q99801 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC2.96□□□□□ -1.94
NKX3-1Q99801 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC2.96□□□□□ -1.94
NKX3-1Q99801 SYF2P1-201ENST00000550658 413 ntBASIC2.96□□□□□ -1.94
NKX3-1Q99801 ARL2BPP2-201ENST00000550907 489 ntBASIC2.96□□□□□ -1.94
NKX3-1Q99801 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC2.96□□□□□ -1.94
NKX3-1Q99801 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC2.96□□□□□ -1.94
NKX3-1Q99801 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC2.96□□□□□ -1.94
NKX3-1Q99801 MIR3167-201ENST00000579623 85 ntBASIC2.96□□□□□ -1.94
NKX3-1Q99801 AC105224.1-201ENST00000587055 421 ntBASIC2.96□□□□□ -1.94
NKX3-1Q99801 AF038458.1-201ENST00000588406 262 ntBASIC2.96□□□□□ -1.94
NKX3-1Q99801 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC2.96□□□□□ -1.94
NKX3-1Q99801 AC146944.4-201ENST00000602697 718 ntBASIC2.96□□□□□ -1.94
NKX3-1Q99801 DUXAP4-201ENST00000603046 613 ntBASIC2.96□□□□□ -1.94
NKX3-1Q99801 AC079089.3-201ENST00000603094 673 ntBASIC2.96□□□□□ -1.94
NKX3-1Q99801 AC104073.3-201ENST00000610942 955 ntBASIC2.96□□□□□ -1.94
NKX3-1Q99801 AL133173.2-201ENST00000614270 90 ntBASIC2.96□□□□□ -1.94
NKX3-1Q99801 AC091834.1-201ENST00000614543 472 ntBASIC2.96□□□□□ -1.94
NKX3-1Q99801 uc_338.12-201ENST00000616344 181 ntBASIC2.96□□□□□ -1.94
NKX3-1Q99801 PLCE1P1-201ENST00000622094 305 ntBASIC2.96□□□□□ -1.94
NKX3-1Q99801 PISRT1-201ENST00000626175 531 ntBASIC2.96□□□□□ -1.94
NKX3-1Q99801 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
NKX3-1Q99801 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC2.96□□□□□ -1.94
NKX3-1Q99801 BCLAF1P1-201ENST00000505813 2752 ntBASIC2.96□□□□□ -1.94
NKX3-1Q99801 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
NKX3-1Q99801 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
NKX3-1Q99801 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC2.96□□□□□ -1.94
NKX3-1Q99801 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
NKX3-1Q99801 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
NKX3-1Q99801 FARSBP1-201ENST00000435808 1778 ntBASIC2.95□□□□□ -1.94
NKX3-1Q99801 MTCO1P12-201ENST00000414273 1543 ntBASIC2.95□□□□□ -1.94
NKX3-1Q99801 SNORA71.3-201ENST00000362582 128 ntBASIC2.95□□□□□ -1.94
NKX3-1Q99801 Y_RNA.517-201ENST00000384551 106 ntBASIC2.95□□□□□ -1.94
NKX3-1Q99801 AC110754.1-201ENST00000399740 601 ntBASIC2.95□□□□□ -1.94
NKX3-1Q99801 RNU2-16P-201ENST00000410712 136 ntBASIC2.95□□□□□ -1.94
NKX3-1Q99801 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC2.95□□□□□ -1.94
NKX3-1Q99801 ELOCP17-201ENST00000414751 326 ntBASIC2.95□□□□□ -1.94
NKX3-1Q99801 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC2.95□□□□□ -1.94
NKX3-1Q99801 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC2.95□□□□□ -1.94
NKX3-1Q99801 AC018630.2-202ENST00000422992 927 ntBASIC2.95□□□□□ -1.94
NKX3-1Q99801 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC2.95□□□□□ -1.94
NKX3-1Q99801 AL358934.1-201ENST00000432346 324 ntBASIC2.95□□□□□ -1.94
NKX3-1Q99801 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC2.95□□□□□ -1.94
NKX3-1Q99801 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC2.95□□□□□ -1.94
NKX3-1Q99801 MTCO3P45-201ENST00000443036 613 ntBASIC2.95□□□□□ -1.94
NKX3-1Q99801 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC2.95□□□□□ -1.94
NKX3-1Q99801 NANOGNBP1-201ENST00000448444 480 ntBASIC2.95□□□□□ -1.94
NKX3-1Q99801 AC108059.3-201ENST00000456388 214 ntBASIC2.95□□□□□ -1.94
NKX3-1Q99801 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC2.95□□□□□ -1.94
NKX3-1Q99801 HMGN1P18-201ENST00000457642 277 ntBASIC2.95□□□□□ -1.94
NKX3-1Q99801 AC008481.1-201ENST00000463278 396 ntBASIC2.95□□□□□ -1.94
NKX3-1Q99801 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC2.95□□□□□ -1.94
NKX3-1Q99801 AL049874.1-201ENST00000489560 388 ntBASIC2.95□□□□□ -1.94
NKX3-1Q99801 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
NKX3-1Q99801 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
NKX3-1Q99801 RNU6-430P-201ENST00000517078 107 ntBASIC2.95□□□□□ -1.94
NKX3-1Q99801 AC107934.2-201ENST00000518653 310 ntBASIC2.95□□□□□ -1.94
NKX3-1Q99801 HMGN1P28-201ENST00000521340 364 ntBASIC2.95□□□□□ -1.94
NKX3-1Q99801 ERHP1-201ENST00000523006 310 ntBASIC2.95□□□□□ -1.94
NKX3-1Q99801 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC2.95□□□□□ -1.94
NKX3-1Q99801 AP003392.2-201ENST00000527269 208 ntBASIC2.95□□□□□ -1.94
NKX3-1Q99801 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC2.95□□□□□ -1.94
NKX3-1Q99801 OR4H12P-201ENST00000556269 907 ntBASIC2.95□□□□□ -1.94
NKX3-1Q99801 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC2.95□□□□□ -1.94
NKX3-1Q99801 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC2.95□□□□□ -1.94
NKX3-1Q99801 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC2.95□□□□□ -1.94
NKX3-1Q99801 AC009063.1-201ENST00000563342 702 ntBASIC2.95□□□□□ -1.94
NKX3-1Q99801 AP001029.3-201ENST00000588063 596 ntBASIC2.95□□□□□ -1.94
NKX3-1Q99801 AC078795.2-201ENST00000602835 1252 ntBASIC2.95□□□□□ -1.94
NKX3-1Q99801 AC091805.2-201ENST00000603848 235 ntBASIC2.95□□□□□ -1.94
NKX3-1Q99801 AC019176.2-201ENST00000611579 315 ntBASIC2.95□□□□□ -1.94
NKX3-1Q99801 MIR8058-201ENST00000615737 89 ntBASIC2.95□□□□□ -1.94
NKX3-1Q99801 AC068880.5-201ENST00000624331 290 ntBASIC2.95□□□□□ -1.94
NKX3-1Q99801 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC2.95□□□□□ -1.94
NKX3-1Q99801 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC2.95□□□□□ -1.94
NKX3-1Q99801 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
NKX3-1Q99801 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC2.95□□□□□ -1.94
NKX3-1Q99801 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC2.95□□□□□ -1.94
NKX3-1Q99801 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC2.95□□□□□ -1.94
NKX3-1Q99801 AC007256.1-201ENST00000392253 2765 ntBASIC2.95□□□□□ -1.94
NKX3-1Q99801 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC2.94□□□□□ -1.94
NKX3-1Q99801 AC058791.1-201ENST00000608412 3198 ntBASIC2.94□□□□□ -1.94
NKX3-1Q99801 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
NKX3-1Q99801 AC032011.1-201ENST00000611703 1549 ntBASIC2.94□□□□□ -1.94
NKX3-1Q99801 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
NKX3-1Q99801 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC2.94□□□□□ -1.94
NKX3-1Q99801 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
NKX3-1Q99801 RNU6-39P-201ENST00000384344 107 ntBASIC2.94□□□□□ -1.94
NKX3-1Q99801 MIR591-201ENST00000385290 95 ntBASIC2.94□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 95.7 ms