Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AP004247.1-201ENST00000531556 1289 ntBASIC3.23□□□□□ -1.89
USP28Q96RU2 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.23□□□□□ -1.89
USP28Q96RU2 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC3.23□□□□□ -1.89
USP28Q96RU2 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.23□□□□□ -1.89
USP28Q96RU2 AC091489.2-201ENST00000566263 604 ntBASIC3.23□□□□□ -1.89
USP28Q96RU2 AC006504.3-201ENST00000586818 523 ntBASIC3.23□□□□□ -1.89
USP28Q96RU2 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC3.23□□□□□ -1.89
USP28Q96RU2 SRGNP1-201ENST00000603392 451 ntBASIC3.23□□□□□ -1.89
USP28Q96RU2 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC3.23□□□□□ -1.89
USP28Q96RU2 AC025594.3-201ENST00000613068 790 ntBASIC3.23□□□□□ -1.89
USP28Q96RU2 AL355810.1-201ENST00000614629 552 ntBASIC3.23□□□□□ -1.89
USP28Q96RU2 AC027807.2-201ENST00000616099 408 ntBASIC3.23□□□□□ -1.89
USP28Q96RU2 AC009509.4-201ENST00000619202 509 ntBASIC3.23□□□□□ -1.89
USP28Q96RU2 AC009878.1-201ENST00000621819 340 ntBASIC3.23□□□□□ -1.89
USP28Q96RU2 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC3.23□□□□□ -1.89
USP28Q96RU2 MTND5P1-201ENST00000445440 1375 ntBASIC3.23□□□□□ -1.89
USP28Q96RU2 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
USP28Q96RU2 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
USP28Q96RU2 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.23□□□□□ -1.89
USP28Q96RU2 FAM35CP-201ENST00000554755 2470 ntBASIC3.22□□□□□ -1.89
USP28Q96RU2 MIR422A-201ENST00000362286 90 ntBASIC3.22□□□□□ -1.89
USP28Q96RU2 Y_RNA.194-201ENST00000363985 102 ntBASIC3.22□□□□□ -1.89
USP28Q96RU2 MIR320C1-201ENST00000408566 88 ntBASIC3.22□□□□□ -1.89
USP28Q96RU2 SNORD88.1-201ENST00000408684 91 ntBASIC3.22□□□□□ -1.89
USP28Q96RU2 RNU6-712P-201ENST00000410558 100 ntBASIC3.22□□□□□ -1.89
USP28Q96RU2 RNA5SP344-201ENST00000411081 104 ntBASIC3.22□□□□□ -1.89
USP28Q96RU2 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC3.22□□□□□ -1.89
USP28Q96RU2 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC3.22□□□□□ -1.89
USP28Q96RU2 MTCO2P34-201ENST00000421994 607 ntBASIC3.22□□□□□ -1.89
USP28Q96RU2 SLC44A3-AS1-205ENST00000424505 612 ntBASIC3.22□□□□□ -1.89
USP28Q96RU2 MTATP6P4-201ENST00000427725 675 ntBASIC3.22□□□□□ -1.89
USP28Q96RU2 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC3.22□□□□□ -1.89
USP28Q96RU2 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC3.22□□□□□ -1.89
USP28Q96RU2 SNRPEP7-201ENST00000438350 220 ntBASIC3.22□□□□□ -1.89
USP28Q96RU2 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC3.22□□□□□ -1.89
USP28Q96RU2 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC3.22□□□□□ -1.89
USP28Q96RU2 COX6CP2-201ENST00000444980 225 ntBASIC3.22□□□□□ -1.89
USP28Q96RU2 AC093392.2-201ENST00000450682 337 ntBASIC3.22□□□□□ -1.89
USP28Q96RU2 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC3.22□□□□□ -1.89
USP28Q96RU2 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.22□□□□□ -1.89
USP28Q96RU2 OR6K1P-201ENST00000456766 971 ntBASIC3.22□□□□□ -1.89
USP28Q96RU2 RPS20P24-201ENST00000457473 361 ntBASIC3.22□□□□□ -1.89
USP28Q96RU2 RPL9P33-201ENST00000484311 566 ntBASIC3.22□□□□□ -1.89
USP28Q96RU2 AC023424.2-201ENST00000493479 777 ntBASIC3.22□□□□□ -1.89
USP28Q96RU2 MLLT10P2-201ENST00000506434 249 ntBASIC3.22□□□□□ -1.89
USP28Q96RU2 AF131216.2-201ENST00000512316 564 ntBASIC3.22□□□□□ -1.89
USP28Q96RU2 SCGB1D5P-201ENST00000515134 247 ntBASIC3.22□□□□□ -1.89
USP28Q96RU2 RNA5SP216-201ENST00000516111 123 ntBASIC3.22□□□□□ -1.89
USP28Q96RU2 RNU6-27P-201ENST00000516146 107 ntBASIC3.22□□□□□ -1.89
USP28Q96RU2 AP002748.2-201ENST00000528671 348 ntBASIC3.22□□□□□ -1.89
USP28Q96RU2 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC3.22□□□□□ -1.89
USP28Q96RU2 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC3.22□□□□□ -1.89
USP28Q96RU2 AL133271.1-201ENST00000538229 291 ntBASIC3.22□□□□□ -1.89
USP28Q96RU2 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC3.22□□□□□ -1.89
USP28Q96RU2 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC3.22□□□□□ -1.89
USP28Q96RU2 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
USP28Q96RU2 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC3.22□□□□□ -1.89
USP28Q96RU2 AC004987.4-201ENST00000603383 338 ntBASIC3.22□□□□□ -1.89
USP28Q96RU2 RPL23AP92-201ENST00000603609 255 ntBASIC3.22□□□□□ -1.89
USP28Q96RU2 AP001330.4-201ENST00000604350 154 ntBASIC3.22□□□□□ -1.89
USP28Q96RU2 AC090186.1-201ENST00000605991 572 ntBASIC3.22□□□□□ -1.89
USP28Q96RU2 AC010678.1-201ENST00000614118 713 ntBASIC3.22□□□□□ -1.89
USP28Q96RU2 AC104010.1-201ENST00000616889 150 ntBASIC3.22□□□□□ -1.89
USP28Q96RU2 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
USP28Q96RU2 MIR8057-201ENST00000620957 69 ntBASIC3.22□□□□□ -1.89
USP28Q96RU2 AC091925.2-201ENST00000625059 256 ntBASIC3.22□□□□□ -1.89
USP28Q96RU2 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.22□□□□□ -1.89
USP28Q96RU2 MTND5P7-201ENST00000413558 1798 ntBASIC3.22□□□□□ -1.89
USP28Q96RU2 AC096644.4-201ENST00000563417 2912 ntBASIC3.22□□□□□ -1.89
USP28Q96RU2 AL161431.1-201ENST00000618966 4205 ntBASIC3.22□□□□□ -1.89
USP28Q96RU2 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
USP28Q96RU2 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
USP28Q96RU2 API5P2-201ENST00000397055 1498 ntBASIC3.22□□□□□ -1.89
USP28Q96RU2 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.21□□□□□ -1.9
USP28Q96RU2 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC3.21□□□□□ -1.9
USP28Q96RU2 RNU5F-7P-201ENST00000363696 115 ntBASIC3.21□□□□□ -1.9
USP28Q96RU2 RNU6-1074P-201ENST00000383995 104 ntBASIC3.21□□□□□ -1.9
USP28Q96RU2 RNU6-769P-201ENST00000384407 104 ntBASIC3.21□□□□□ -1.9
USP28Q96RU2 RNU6-878P-201ENST00000384578 110 ntBASIC3.21□□□□□ -1.9
USP28Q96RU2 RNU2-15P-201ENST00000410692 191 ntBASIC3.21□□□□□ -1.9
USP28Q96RU2 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.21□□□□□ -1.9
USP28Q96RU2 AC099677.1-201ENST00000420575 175 ntBASIC3.21□□□□□ -1.9
USP28Q96RU2 RPS27AP14-201ENST00000422868 454 ntBASIC3.21□□□□□ -1.9
USP28Q96RU2 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC3.21□□□□□ -1.9
USP28Q96RU2 MUPP-201ENST00000438111 566 ntBASIC3.21□□□□□ -1.9
USP28Q96RU2 AL513043.1-201ENST00000439124 535 ntBASIC3.21□□□□□ -1.9
USP28Q96RU2 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC3.21□□□□□ -1.9
USP28Q96RU2 AL031667.1-201ENST00000440222 725 ntBASIC3.21□□□□□ -1.9
USP28Q96RU2 AL671855.1-201ENST00000446875 1203 ntBASIC3.21□□□□□ -1.9
USP28Q96RU2 AP000542.1-201ENST00000448473 371 ntBASIC3.21□□□□□ -1.9
USP28Q96RU2 RPL23AP31-201ENST00000456160 467 ntBASIC3.21□□□□□ -1.9
USP28Q96RU2 RNU6-956P-201ENST00000458868 103 ntBASIC3.21□□□□□ -1.9
USP28Q96RU2 RPS26P21-201ENST00000475397 348 ntBASIC3.21□□□□□ -1.9
USP28Q96RU2 AC116337.2-201ENST00000477662 156 ntBASIC3.21□□□□□ -1.9
USP28Q96RU2 AP000797.1-201ENST00000478870 387 ntBASIC3.21□□□□□ -1.9
USP28Q96RU2 RN7SL297P-201ENST00000483161 293 ntBASIC3.21□□□□□ -1.9
USP28Q96RU2 CBX3P3-201ENST00000508108 532 ntBASIC3.21□□□□□ -1.9
USP28Q96RU2 SNORA31.1-201ENST00000515993 133 ntBASIC3.21□□□□□ -1.9
USP28Q96RU2 SNORA31.5-201ENST00000516190 133 ntBASIC3.21□□□□□ -1.9
USP28Q96RU2 AC025881.1-201ENST00000518851 512 ntBASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 114.4 ms