Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 AC107214.2-201ENST00000608204 634 ntBASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 AC103710.4-201ENST00000609301 899 ntBASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 AL731566.2-201ENST00000618971 317 ntBASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 IL33-203ENST00000456383 2501 ntTSL 5 BASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 RNU1-33P-201ENST00000364249 162 ntBASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 MIR490-201ENST00000384865 128 ntBASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 SNORD115.1-201ENST00000391109 76 ntBASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 AC063979.1-201ENST00000415539 377 ntBASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 Z85995.1-201ENST00000415547 335 ntBASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 AL451054.2-201ENST00000420896 202 ntBASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 AC092047.1-201ENST00000424997 240 ntBASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 MTND5P25-201ENST00000430499 799 ntBASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 RPL7P34-201ENST00000433316 712 ntBASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 RPL36AP6-201ENST00000435770 321 ntBASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 RPL37P21-201ENST00000435890 276 ntBASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 DUXAP5-201ENST00000529668 529 ntBASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 AL355836.1-201ENST00000555951 870 ntBASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 MEG8-218ENST00000556720 456 ntTSL 3 BASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 HMGB1P6-201ENST00000569046 646 ntBASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 MIR3609-201ENST00000582661 80 ntBASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 AL353778.1-201ENST00000603149 408 ntBASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 AL139344.1-201ENST00000605228 195 ntBASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 AC002064.3-201ENST00000623448 346 ntBASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 AP003485.2-201ENST00000623636 610 ntBASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 AC138915.1-201ENST00000565427 1685 ntBASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 AC092125.1-201ENST00000562568 1995 ntBASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.36□□□□□ -2.03
RPUSD4Q96CM3 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 AL049641.1-201ENST00000441055 1948 ntBASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 AC007785.2-201ENST00000598627 1916 ntBASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 Y_RNA.46-201ENST00000362695 102 ntBASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 RNU6-501P-201ENST00000364072 100 ntBASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 RNU5A-8P-201ENST00000364102 114 ntBASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 RNU6-741P-201ENST00000383889 107 ntBASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 RNU4-72P-201ENST00000410754 173 ntBASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 AC078974.1-201ENST00000411597 223 ntBASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 AL513331.1-201ENST00000411908 397 ntBASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 SPA17P1-201ENST00000416656 452 ntBASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 VPS26BP1-201ENST00000417155 755 ntBASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 AC011233.1-201ENST00000422812 283 ntBASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 RPS6P15-201ENST00000431996 751 ntBASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 USP12PX-201ENST00000432383 1057 ntBASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 AL512286.1-201ENST00000439244 400 ntBASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 AC005094.1-201ENST00000440420 368 ntBASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 BNIP3P2-201ENST00000441221 577 ntBASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 CBWD4P-201ENST00000445695 655 ntBASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 AC098826.2-201ENST00000452011 651 ntBASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 AP000705.1-201ENST00000454567 350 ntBASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 AC027673.1-201ENST00000456245 405 ntBASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 AL135752.1-201ENST00000479477 471 ntBASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 RPL9P33-201ENST00000484311 566 ntBASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 AC006499.5-201ENST00000505037 514 ntBASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 MEPE-206ENST00000511670 550 ntTSL 4 BASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 AC107016.2-201ENST00000547968 190 ntBASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 AC034105.3-201ENST00000565294 442 ntBASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 AC135628.1-201ENST00000568867 534 ntBASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 AC005951.2-201ENST00000576282 495 ntBASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 MIR4446-201ENST00000578505 67 ntBASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 MIR3670-2-201ENST00000582974 65 ntBASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 MIR3670-1-201ENST00000584160 65 ntBASIC2.35□□□□□ -2.03
RPUSD4Q96CM3 MIR3670-3-201ENST00000584855 65 ntBASIC2.35□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms