Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 OR10AB1P-201ENST00000609613 938 ntBASIC1.86□□□□□ -2.11
USP54Q70EL1 AP000676.4-201ENST00000624659 623 ntBASIC1.86□□□□□ -2.11
USP54Q70EL1 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
USP54Q70EL1 OR4G11P-202ENST00000642116 1414 ntBASIC1.86□□□□□ -2.11
USP54Q70EL1 SNORD114-26-201ENST00000363543 72 ntBASIC1.86□□□□□ -2.11
USP54Q70EL1 MIR1304-201ENST00000408243 91 ntBASIC1.86□□□□□ -2.11
USP54Q70EL1 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC1.86□□□□□ -2.11
USP54Q70EL1 AL392003.1-201ENST00000434394 243 ntBASIC1.86□□□□□ -2.11
USP54Q70EL1 OR10R1P-201ENST00000441524 1141 ntBASIC1.86□□□□□ -2.11
USP54Q70EL1 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC1.86□□□□□ -2.11
USP54Q70EL1 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC1.86□□□□□ -2.11
USP54Q70EL1 C1DP3-201ENST00000455013 423 ntBASIC1.86□□□□□ -2.11
USP54Q70EL1 snoU13.3-201ENST00000459441 104 ntBASIC1.86□□□□□ -2.11
USP54Q70EL1 AC010285.1-201ENST00000470580 392 ntBASIC1.86□□□□□ -2.11
USP54Q70EL1 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC1.86□□□□□ -2.11
USP54Q70EL1 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC1.86□□□□□ -2.11
USP54Q70EL1 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC1.86□□□□□ -2.11
USP54Q70EL1 MGST1-215ENST00000540056 546 ntTSL 3 BASIC1.86□□□□□ -2.11
USP54Q70EL1 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.86□□□□□ -2.11
USP54Q70EL1 AC080078.3-201ENST00000605407 463 ntBASIC1.86□□□□□ -2.11
USP54Q70EL1 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC1.86□□□□□ -2.11
USP54Q70EL1 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC1.86□□□□□ -2.11
USP54Q70EL1 AC009950.2-201ENST00000636548 183 ntBASIC1.86□□□□□ -2.11
USP54Q70EL1 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
USP54Q70EL1 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC1.86□□□□□ -2.11
USP54Q70EL1 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC1.85□□□□□ -2.11
USP54Q70EL1 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
USP54Q70EL1 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
USP54Q70EL1 AL596028.1-201ENST00000326971 197 ntBASIC1.85□□□□□ -2.11
USP54Q70EL1 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC1.85□□□□□ -2.11
USP54Q70EL1 RNU2-40P-201ENST00000410833 196 ntBASIC1.85□□□□□ -2.11
USP54Q70EL1 AL445183.3-201ENST00000414168 502 ntBASIC1.85□□□□□ -2.11
USP54Q70EL1 AC096632.1-201ENST00000427395 310 ntBASIC1.85□□□□□ -2.11
USP54Q70EL1 AC108157.1-201ENST00000510511 539 ntBASIC1.85□□□□□ -2.11
USP54Q70EL1 SNORA31.20-201ENST00000517111 133 ntBASIC1.85□□□□□ -2.11
USP54Q70EL1 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.85□□□□□ -2.11
USP54Q70EL1 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC1.85□□□□□ -2.11
USP54Q70EL1 AC008739.2-201ENST00000597006 317 ntBASIC1.85□□□□□ -2.11
USP54Q70EL1 AC136443.5-201ENST00000603741 370 ntBASIC1.85□□□□□ -2.11
USP54Q70EL1 AC095031.1-201ENST00000623685 672 ntBASIC1.85□□□□□ -2.11
USP54Q70EL1 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC1.85□□□□□ -2.11
USP54Q70EL1 RNU6-1249P-201ENST00000363237 111 ntBASIC1.84□□□□□ -2.11
USP54Q70EL1 RNU6-1243P-201ENST00000364028 107 ntBASIC1.84□□□□□ -2.11
USP54Q70EL1 SNORA6-201ENST00000384033 151 ntBASIC1.84□□□□□ -2.11
USP54Q70EL1 RNU6-1293P-201ENST00000384077 107 ntBASIC1.84□□□□□ -2.11
USP54Q70EL1 RNU6-31P-201ENST00000384388 108 ntBASIC1.84□□□□□ -2.11
USP54Q70EL1 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC1.84□□□□□ -2.11
USP54Q70EL1 OFD1P18Y-201ENST00000420889 959 ntBASIC1.84□□□□□ -2.11
USP54Q70EL1 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC1.84□□□□□ -2.11
USP54Q70EL1 SNORD121B-201ENST00000458838 81 ntBASIC1.84□□□□□ -2.11
USP54Q70EL1 AC092991.1-201ENST00000477176 376 ntBASIC1.84□□□□□ -2.11
USP54Q70EL1 AC022493.1-201ENST00000492984 337 ntBASIC1.84□□□□□ -2.11
USP54Q70EL1 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC1.84□□□□□ -2.11
USP54Q70EL1 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC1.84□□□□□ -2.11
USP54Q70EL1 SUB1P1-201ENST00000524415 382 ntBASIC1.84□□□□□ -2.11
USP54Q70EL1 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.84□□□□□ -2.11
USP54Q70EL1 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
USP54Q70EL1 ANP32BP3-201ENST00000559213 706 ntBASIC1.84□□□□□ -2.11
USP54Q70EL1 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC1.84□□□□□ -2.11
USP54Q70EL1 MIR6515-201ENST00000619843 57 ntBASIC1.84□□□□□ -2.11
USP54Q70EL1 RNU6-156P-201ENST00000621869 107 ntBASIC1.84□□□□□ -2.11
USP54Q70EL1 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.84□□□□□ -2.11
USP54Q70EL1 AL354685.2-201ENST00000448218 1447 ntBASIC1.84□□□□□ -2.12
USP54Q70EL1 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC1.83□□□□□ -2.12
USP54Q70EL1 PGBD4P3-201ENST00000440731 581 ntBASIC1.83□□□□□ -2.12
USP54Q70EL1 AL513321.1-201ENST00000441175 761 ntBASIC1.83□□□□□ -2.12
USP54Q70EL1 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC1.83□□□□□ -2.12
USP54Q70EL1 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC1.83□□□□□ -2.12
USP54Q70EL1 AC015908.1-201ENST00000478739 476 ntBASIC1.83□□□□□ -2.12
USP54Q70EL1 RNF138P1-201ENST00000502765 546 ntBASIC1.83□□□□□ -2.12
USP54Q70EL1 AF131216.2-201ENST00000512316 564 ntBASIC1.83□□□□□ -2.12
USP54Q70EL1 RNA5SP220-201ENST00000516298 104 ntBASIC1.83□□□□□ -2.12
USP54Q70EL1 Y_RNA.675-201ENST00000516389 149 ntBASIC1.83□□□□□ -2.12
USP54Q70EL1 AC004923.2-201ENST00000529649 369 ntBASIC1.83□□□□□ -2.12
USP54Q70EL1 AC068338.1-201ENST00000565567 176 ntBASIC1.83□□□□□ -2.12
USP54Q70EL1 COX6CP3-201ENST00000580869 223 ntBASIC1.83□□□□□ -2.12
USP54Q70EL1 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC1.83□□□□□ -2.12
USP54Q70EL1 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.83□□□□□ -2.12
USP54Q70EL1 AC138915.1-201ENST00000565427 1685 ntBASIC1.83□□□□□ -2.12
USP54Q70EL1 RNU1-22P-201ENST00000363334 158 ntBASIC1.83□□□□□ -2.12
USP54Q70EL1 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC1.83□□□□□ -2.12
USP54Q70EL1 SETP11-201ENST00000473027 690 ntBASIC1.83□□□□□ -2.12
USP54Q70EL1 RBM43P1-201ENST00000476891 1081 ntBASIC1.83□□□□□ -2.12
USP54Q70EL1 SUMO1P1-201ENST00000497904 306 ntBASIC1.83□□□□□ -2.12
USP54Q70EL1 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC1.83□□□□□ -2.12
USP54Q70EL1 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.83□□□□□ -2.12
USP54Q70EL1 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.83□□□□□ -2.12
USP54Q70EL1 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC1.83□□□□□ -2.12
USP54Q70EL1 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC1.83□□□□□ -2.12
USP54Q70EL1 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC1.83□□□□□ -2.12
USP54Q70EL1 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC1.83□□□□□ -2.12
USP54Q70EL1 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC1.83□□□□□ -2.12
USP54Q70EL1 AL133216.2-202ENST00000634512 349 ntBASIC1.83□□□□□ -2.12
USP54Q70EL1 MIR203B-201ENST00000636080 86 ntBASIC1.83□□□□□ -2.12
USP54Q70EL1 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC1.82□□□□□ -2.12
USP54Q70EL1 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC1.82□□□□□ -2.12
USP54Q70EL1 SNORA1.3-201ENST00000384676 136 ntBASIC1.82□□□□□ -2.12
USP54Q70EL1 U3.40-201ENST00000408706 208 ntBASIC1.82□□□□□ -2.12
USP54Q70EL1 RNA5SP38-201ENST00000410750 119 ntBASIC1.82□□□□□ -2.12
USP54Q70EL1 RNU2-25P-201ENST00000411041 191 ntBASIC1.82□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 98 ms