Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 TEX21P-201ENST00000447107 1476 ntBASIC1.12□□□□□ -2.23
CHD9Q3L8U1 RNU6-799P-201ENST00000363567 107 ntBASIC1.11□□□□□ -2.23
CHD9Q3L8U1 Y_RNA.294-201ENST00000364916 102 ntBASIC1.11□□□□□ -2.23
CHD9Q3L8U1 RNU1-101P-201ENST00000391171 127 ntBASIC1.11□□□□□ -2.23
CHD9Q3L8U1 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC1.11□□□□□ -2.23
CHD9Q3L8U1 MTCYBP29-201ENST00000436327 1006 ntBASIC1.11□□□□□ -2.23
CHD9Q3L8U1 AC090515.1-201ENST00000465295 476 ntBASIC1.11□□□□□ -2.23
CHD9Q3L8U1 AC005912.1-201ENST00000495392 255 ntBASIC1.11□□□□□ -2.23
CHD9Q3L8U1 RPS27AP10-201ENST00000496103 208 ntBASIC1.11□□□□□ -2.23
CHD9Q3L8U1 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC1.11□□□□□ -2.23
CHD9Q3L8U1 MTND4LP22-201ENST00000508209 276 ntBASIC1.11□□□□□ -2.23
CHD9Q3L8U1 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC1.11□□□□□ -2.23
CHD9Q3L8U1 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC1.11□□□□□ -2.23
CHD9Q3L8U1 AC116563.2-201ENST00000624751 535 ntBASIC1.11□□□□□ -2.23
CHD9Q3L8U1 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC1.11□□□□□ -2.23
CHD9Q3L8U1 MT-TP-201ENST00000387461 68 ntBASIC1.11□□□□□ -2.23
CHD9Q3L8U1 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC1.11□□□□□ -2.23
CHD9Q3L8U1 AL353898.1-201ENST00000444055 238 ntBASIC1.11□□□□□ -2.23
CHD9Q3L8U1 AC093852.1-201ENST00000503587 266 ntBASIC1.11□□□□□ -2.23
CHD9Q3L8U1 RNU4-60P-201ENST00000517239 135 ntBASIC1.11□□□□□ -2.23
CHD9Q3L8U1 ANP32BP3-201ENST00000559213 706 ntBASIC1.11□□□□□ -2.23
CHD9Q3L8U1 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC1.11□□□□□ -2.23
CHD9Q3L8U1 ZNF33BP1-201ENST00000452497 1834 ntBASIC1.11□□□□□ -2.23
CHD9Q3L8U1 AL136520.1-201ENST00000600311 1322 ntBASIC1.11□□□□□ -2.23
CHD9Q3L8U1 Y_RNA.303-201ENST00000364998 94 ntBASIC1.1□□□□□ -2.23
CHD9Q3L8U1 Y_RNA.390-201ENST00000383932 102 ntBASIC1.1□□□□□ -2.23
CHD9Q3L8U1 AL591212.2-201ENST00000433923 257 ntBASIC1.1□□□□□ -2.23
CHD9Q3L8U1 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC1.1□□□□□ -2.23
CHD9Q3L8U1 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC1.1□□□□□ -2.23
CHD9Q3L8U1 MIR4295-201ENST00000585286 85 ntBASIC1.1□□□□□ -2.23
CHD9Q3L8U1 AC096720.1-201ENST00000604441 183 ntBASIC1.1□□□□□ -2.23
CHD9Q3L8U1 AC022513.1-201ENST00000624512 117 ntBASIC1.1□□□□□ -2.23
CHD9Q3L8U1 AC073055.1-201ENST00000456901 1621 ntBASIC1.1□□□□□ -2.23
CHD9Q3L8U1 RPL23AP41-201ENST00000484754 458 ntBASIC1.1□□□□□ -2.23
CHD9Q3L8U1 DNAJC8P1-201ENST00000554535 372 ntBASIC1.1□□□□□ -2.23
CHD9Q3L8U1 AC108706.1-201ENST00000611053 297 ntBASIC1.1□□□□□ -2.23
CHD9Q3L8U1 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC1.1□□□□□ -2.23
CHD9Q3L8U1 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC1.1□□□□□ -2.23
CHD9Q3L8U1 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.1□□□□□ -2.23
CHD9Q3L8U1 SNORA70.7-201ENST00000384159 133 ntBASIC1.1□□□□□ -2.23
CHD9Q3L8U1 RNA5SP465-201ENST00000391195 109 ntBASIC1.1□□□□□ -2.23
CHD9Q3L8U1 HMGB1P49-201ENST00000418882 569 ntBASIC1.1□□□□□ -2.23
CHD9Q3L8U1 RPL30P4-201ENST00000429309 333 ntBASIC1.1□□□□□ -2.23
CHD9Q3L8U1 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC1.1□□□□□ -2.23
CHD9Q3L8U1 ARPC3P2-201ENST00000457786 533 ntBASIC1.1□□□□□ -2.23
CHD9Q3L8U1 AP002371.1-201ENST00000463604 433 ntBASIC1.1□□□□□ -2.23
CHD9Q3L8U1 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC1.1□□□□□ -2.23
CHD9Q3L8U1 RNA5SP121-201ENST00000516537 101 ntBASIC1.1□□□□□ -2.23
CHD9Q3L8U1 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC1.1□□□□□ -2.23
CHD9Q3L8U1 MTND4LP24-201ENST00000572277 291 ntBASIC1.1□□□□□ -2.23
CHD9Q3L8U1 AC024619.4-201ENST00000580924 316 ntBASIC1.1□□□□□ -2.23
CHD9Q3L8U1 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC1.1□□□□□ -2.23
CHD9Q3L8U1 AL133393.1-201ENST00000603277 287 ntBASIC1.1□□□□□ -2.23
CHD9Q3L8U1 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC1.1□□□□□ -2.23
CHD9Q3L8U1 AC090617.7-201ENST00000623952 126 ntBASIC1.1□□□□□ -2.23
CHD9Q3L8U1 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
CHD9Q3L8U1 MTND4P34-201ENST00000572715 1371 ntBASIC1.09□□□□□ -2.23
CHD9Q3L8U1 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.23
CHD9Q3L8U1 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC1.09□□□□□ -2.23
CHD9Q3L8U1 RNA5SP393-201ENST00000363423 117 ntBASIC1.09□□□□□ -2.23
CHD9Q3L8U1 RNU6-716P-201ENST00000365621 103 ntBASIC1.09□□□□□ -2.23
CHD9Q3L8U1 TXNP7-201ENST00000406296 293 ntBASIC1.09□□□□□ -2.23
CHD9Q3L8U1 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC1.09□□□□□ -2.23
CHD9Q3L8U1 RPS27P1-201ENST00000450552 247 ntBASIC1.09□□□□□ -2.23
CHD9Q3L8U1 PRELID3BP4-201ENST00000515476 571 ntBASIC1.09□□□□□ -2.23
CHD9Q3L8U1 AL589935.2-201ENST00000616471 1231 ntBASIC1.09□□□□□ -2.23
CHD9Q3L8U1 AC006065.5-201ENST00000623427 349 ntBASIC1.09□□□□□ -2.23
CHD9Q3L8U1 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC1.09□□□□□ -2.23
CHD9Q3L8U1 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC1.09□□□□□ -2.24
CHD9Q3L8U1 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.24
CHD9Q3L8U1 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC1.09□□□□□ -2.24
CHD9Q3L8U1 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC1.09□□□□□ -2.24
CHD9Q3L8U1 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC1.09□□□□□ -2.24
CHD9Q3L8U1 AC104308.1-201ENST00000454621 333 ntBASIC1.09□□□□□ -2.24
CHD9Q3L8U1 RNU6-319P-201ENST00000516025 108 ntBASIC1.09□□□□□ -2.24
CHD9Q3L8U1 SNORA31.16-201ENST00000516773 139 ntBASIC1.09□□□□□ -2.24
CHD9Q3L8U1 AF279873.1-201ENST00000523393 313 ntBASIC1.09□□□□□ -2.24
CHD9Q3L8U1 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC1.09□□□□□ -2.24
CHD9Q3L8U1 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC1.09□□□□□ -2.24
CHD9Q3L8U1 AC121758.2-201ENST00000553271 193 ntBASIC1.09□□□□□ -2.24
CHD9Q3L8U1 AC025918.2-201ENST00000558683 763 ntBASIC1.09□□□□□ -2.24
CHD9Q3L8U1 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC1.09□□□□□ -2.24
CHD9Q3L8U1 AL138955.1-201ENST00000622881 1040 ntBASIC1.09□□□□□ -2.24
CHD9Q3L8U1 AC097655.1-201ENST00000635075 318 ntBASIC1.09□□□□□ -2.24
CHD9Q3L8U1 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC1.08□□□□□ -2.24
CHD9Q3L8U1 HSPE1P1-201ENST00000421494 318 ntBASIC1.08□□□□□ -2.24
CHD9Q3L8U1 RPS15AP7-201ENST00000439294 405 ntBASIC1.08□□□□□ -2.24
CHD9Q3L8U1 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC1.08□□□□□ -2.24
CHD9Q3L8U1 VN1R84P-201ENST00000593697 235 ntBASIC1.08□□□□□ -2.24
CHD9Q3L8U1 AC092140.2-201ENST00000618027 521 ntBASIC1.08□□□□□ -2.24
CHD9Q3L8U1 DEFB108F-201ENST00000344638 222 ntBASIC1.08□□□□□ -2.24
CHD9Q3L8U1 RNU4-38P-201ENST00000364472 129 ntBASIC1.08□□□□□ -2.24
CHD9Q3L8U1 AL034374.1-201ENST00000406329 351 ntBASIC1.08□□□□□ -2.24
CHD9Q3L8U1 ARL5AP2-201ENST00000444698 533 ntBASIC1.08□□□□□ -2.24
CHD9Q3L8U1 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC1.08□□□□□ -2.24
CHD9Q3L8U1 HSPE1P4-201ENST00000550617 308 ntBASIC1.08□□□□□ -2.24
CHD9Q3L8U1 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC1.08□□□□□ -2.24
CHD9Q3L8U1 HSPE1P14-201ENST00000605812 302 ntBASIC1.08□□□□□ -2.24
CHD9Q3L8U1 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC1.08□□□□□ -2.24
CHD9Q3L8U1 RNU6-50P-201ENST00000362356 103 ntBASIC1.07□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms