Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 AC005344.1-201ENST00000613391 459 ntBASIC4□□□□□ -1.77
COL4A3Q01955 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC4□□□□□ -1.77
COL4A3Q01955 MIR7975-201ENST00000619350 68 ntBASIC4□□□□□ -1.77
COL4A3Q01955 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC4□□□□□ -1.77
COL4A3Q01955 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
COL4A3Q01955 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4□□□□□ -1.77
COL4A3Q01955 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
COL4A3Q01955 TAB3P1-202ENST00000452645 1634 ntBASIC4□□□□□ -1.77
COL4A3Q01955 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
COL4A3Q01955 AC007823.1-201ENST00000569932 1566 ntBASIC4□□□□□ -1.77
COL4A3Q01955 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
COL4A3Q01955 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC4□□□□□ -1.77
COL4A3Q01955 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
COL4A3Q01955 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
COL4A3Q01955 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC4□□□□□ -1.77
COL4A3Q01955 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC4□□□□□ -1.77
COL4A3Q01955 AC011155.1-201ENST00000316512 456 ntBASIC4□□□□□ -1.77
COL4A3Q01955 Y_RNA.28-201ENST00000362554 111 ntBASIC4□□□□□ -1.77
COL4A3Q01955 RNU5A-8P-201ENST00000364102 114 ntBASIC4□□□□□ -1.77
COL4A3Q01955 RNU6-522P-201ENST00000364497 107 ntBASIC4□□□□□ -1.77
COL4A3Q01955 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
COL4A3Q01955 Y_RNA.401-201ENST00000383965 117 ntBASIC4□□□□□ -1.77
COL4A3Q01955 RNU6-641P-201ENST00000384006 107 ntBASIC4□□□□□ -1.77
COL4A3Q01955 RNU6-331P-201ENST00000384724 107 ntBASIC4□□□□□ -1.77
COL4A3Q01955 MIR199A2-201ENST00000385289 110 ntBASIC4□□□□□ -1.77
COL4A3Q01955 RNU6-1106P-201ENST00000390845 107 ntBASIC4□□□□□ -1.77
COL4A3Q01955 MIR548K-201ENST00000408406 116 ntBASIC4□□□□□ -1.77
COL4A3Q01955 RPL37P10-201ENST00000412884 288 ntBASIC4□□□□□ -1.77
COL4A3Q01955 AC113618.1-201ENST00000416747 285 ntBASIC4□□□□□ -1.77
COL4A3Q01955 EIF4EP1-201ENST00000422311 642 ntBASIC4□□□□□ -1.77
COL4A3Q01955 PMCHL1-202ENST00000423102 261 ntBASIC4□□□□□ -1.77
COL4A3Q01955 MED13P1-201ENST00000428342 171 ntBASIC4□□□□□ -1.77
COL4A3Q01955 PRPS1P1-201ENST00000445305 876 ntBASIC4□□□□□ -1.77
COL4A3Q01955 IGKV1OR-3-201ENST00000446944 348 ntBASIC4□□□□□ -1.77
COL4A3Q01955 AL118520.1-201ENST00000450770 291 ntBASIC4□□□□□ -1.77
COL4A3Q01955 AC104308.1-201ENST00000454621 333 ntBASIC4□□□□□ -1.77
COL4A3Q01955 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC4□□□□□ -1.77
COL4A3Q01955 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC4□□□□□ -1.77
COL4A3Q01955 RPL39P5-202ENST00000512505 151 ntBASIC4□□□□□ -1.77
COL4A3Q01955 SMURF2P1-201ENST00000514992 481 ntBASIC4□□□□□ -1.77
COL4A3Q01955 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4□□□□□ -1.77
COL4A3Q01955 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC4□□□□□ -1.77
COL4A3Q01955 APOOP3-201ENST00000536787 586 ntBASIC4□□□□□ -1.77
COL4A3Q01955 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC4□□□□□ -1.77
COL4A3Q01955 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC4□□□□□ -1.77
COL4A3Q01955 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC4□□□□□ -1.77
COL4A3Q01955 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC4□□□□□ -1.77
COL4A3Q01955 MIR4424-201ENST00000585257 86 ntBASIC4□□□□□ -1.77
COL4A3Q01955 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC4□□□□□ -1.77
COL4A3Q01955 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
COL4A3Q01955 AL138713.1-201ENST00000624026 2130 ntBASIC4□□□□□ -1.77
COL4A3Q01955 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
COL4A3Q01955 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC4□□□□□ -1.77
COL4A3Q01955 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
COL4A3Q01955 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC3.99□□□□□ -1.77
COL4A3Q01955 ZNF962P-201ENST00000443465 3140 ntBASIC3.99□□□□□ -1.77
COL4A3Q01955 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
COL4A3Q01955 PRO1804-201ENST00000623780 2050 ntBASIC3.99□□□□□ -1.77
COL4A3Q01955 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC3.99□□□□□ -1.77
COL4A3Q01955 RNA5SP52-201ENST00000362448 134 ntBASIC3.99□□□□□ -1.77
COL4A3Q01955 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
COL4A3Q01955 RPS29P4-201ENST00000414733 161 ntBASIC3.99□□□□□ -1.77
COL4A3Q01955 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC3.99□□□□□ -1.77
COL4A3Q01955 AC005517.2-201ENST00000424673 553 ntBASIC3.99□□□□□ -1.77
COL4A3Q01955 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC3.99□□□□□ -1.77
COL4A3Q01955 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.99□□□□□ -1.77
COL4A3Q01955 AL354710.1-201ENST00000453641 246 ntBASIC3.99□□□□□ -1.77
COL4A3Q01955 MTND1P9-201ENST00000453775 944 ntBASIC3.99□□□□□ -1.77
COL4A3Q01955 RNU7-59P-201ENST00000459101 61 ntBASIC3.99□□□□□ -1.77
COL4A3Q01955 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC3.99□□□□□ -1.77
COL4A3Q01955 AC106707.2-201ENST00000484182 374 ntBASIC3.99□□□□□ -1.77
COL4A3Q01955 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC3.99□□□□□ -1.77
COL4A3Q01955 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC3.99□□□□□ -1.77
COL4A3Q01955 PPBPP1-201ENST00000510807 373 ntBASIC3.99□□□□□ -1.77
COL4A3Q01955 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.99□□□□□ -1.77
COL4A3Q01955 RNU6-1038P-201ENST00000516516 104 ntBASIC3.99□□□□□ -1.77
COL4A3Q01955 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC3.99□□□□□ -1.77
COL4A3Q01955 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC3.99□□□□□ -1.77
COL4A3Q01955 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
COL4A3Q01955 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
COL4A3Q01955 MIR3668-201ENST00000582138 75 ntBASIC3.99□□□□□ -1.77
COL4A3Q01955 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC3.99□□□□□ -1.77
COL4A3Q01955 SMCR2_2.1-201ENST00000619783 161 ntBASIC3.99□□□□□ -1.77
COL4A3Q01955 TTK-211ENST00000627129 240 ntTSL 5 BASIC3.99□□□□□ -1.77
COL4A3Q01955 U6.114-201ENST00000636407 96 ntBASIC3.99□□□□□ -1.77
COL4A3Q01955 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC3.99□□□□□ -1.77
COL4A3Q01955 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
COL4A3Q01955 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC3.99□□□□□ -1.77
COL4A3Q01955 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
COL4A3Q01955 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
COL4A3Q01955 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
COL4A3Q01955 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC3.98□□□□□ -1.77
COL4A3Q01955 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC3.98□□□□□ -1.77
COL4A3Q01955 RNA5SP391-201ENST00000363456 119 ntBASIC3.98□□□□□ -1.77
COL4A3Q01955 U3.12-201ENST00000364498 214 ntBASIC3.98□□□□□ -1.77
COL4A3Q01955 MDM4-202ENST00000367180 547 ntTSL 3 BASIC3.98□□□□□ -1.77
COL4A3Q01955 CISD1P1-201ENST00000393907 327 ntBASIC3.98□□□□□ -1.77
COL4A3Q01955 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC3.98□□□□□ -1.77
COL4A3Q01955 OR2AS1P-201ENST00000427827 319 ntBASIC3.98□□□□□ -1.77
COL4A3Q01955 FABP5P14-201ENST00000437273 393 ntBASIC3.98□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 84.3 ms