Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 FPGT-203ENST00000467578 601 ntTSL 2 BASIC3.57□□□□□ -1.84
HOXA4Q00056 AC010618.1-201ENST00000469924 477 ntBASIC3.57□□□□□ -1.84
HOXA4Q00056 RN7SL812P-201ENST00000493791 279 ntBASIC3.57□□□□□ -1.84
HOXA4Q00056 RPS27AP13-201ENST00000498403 237 ntBASIC3.57□□□□□ -1.84
HOXA4Q00056 RNU6-559P-201ENST00000516151 98 ntBASIC3.57□□□□□ -1.84
HOXA4Q00056 SNORA25.17-201ENST00000517184 124 ntBASIC3.57□□□□□ -1.84
HOXA4Q00056 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC3.57□□□□□ -1.84
HOXA4Q00056 AP000889.2-201ENST00000532684 490 ntBASIC3.57□□□□□ -1.84
HOXA4Q00056 API5-210ENST00000534600 1760 ntTSL 5 BASIC3.57□□□□□ -1.84
HOXA4Q00056 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC3.57□□□□□ -1.84
HOXA4Q00056 AC006064.5-201ENST00000541782 248 ntBASIC3.57□□□□□ -1.84
HOXA4Q00056 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC3.57□□□□□ -1.84
HOXA4Q00056 AC005951.2-201ENST00000576282 495 ntBASIC3.57□□□□□ -1.84
HOXA4Q00056 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC3.57□□□□□ -1.84
HOXA4Q00056 AC067852.3-201ENST00000589177 561 ntBASIC3.57□□□□□ -1.84
HOXA4Q00056 AC006116.10-201ENST00000591836 581 ntBASIC3.57□□□□□ -1.84
HOXA4Q00056 AC020910.2-201ENST00000603635 610 ntBASIC3.57□□□□□ -1.84
HOXA4Q00056 AC104763.2-201ENST00000604179 382 ntBASIC3.57□□□□□ -1.84
HOXA4Q00056 APOOP1-201ENST00000604695 592 ntBASIC3.57□□□□□ -1.84
HOXA4Q00056 PART1_1.1-201ENST00000611761 217 ntBASIC3.57□□□□□ -1.84
HOXA4Q00056 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC3.57□□□□□ -1.84
HOXA4Q00056 SMCR2_2.1-201ENST00000619783 161 ntBASIC3.57□□□□□ -1.84
HOXA4Q00056 TEX41-265ENST00000627785 704 ntTSL 5 BASIC3.57□□□□□ -1.84
HOXA4Q00056 AC016588.2-201ENST00000632484 3021 ntBASIC3.57□□□□□ -1.84
HOXA4Q00056 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC3.57□□□□□ -1.84
HOXA4Q00056 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC3.57□□□□□ -1.84
HOXA4Q00056 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC3.57□□□□□ -1.84
HOXA4Q00056 ZNF962P-201ENST00000443465 3140 ntBASIC3.57□□□□□ -1.84
HOXA4Q00056 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
HOXA4Q00056 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC3.57□□□□□ -1.84
HOXA4Q00056 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.57□□□□□ -1.84
HOXA4Q00056 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC3.56□□□□□ -1.84
HOXA4Q00056 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
HOXA4Q00056 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC3.56□□□□□ -1.84
HOXA4Q00056 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC3.56□□□□□ -1.84
HOXA4Q00056 OR51H2P-202ENST00000641424 3046 ntBASIC3.56□□□□□ -1.84
HOXA4Q00056 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC3.56□□□□□ -1.84
HOXA4Q00056 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC3.56□□□□□ -1.84
HOXA4Q00056 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.56□□□□□ -1.84
HOXA4Q00056 SNORD113-7-201ENST00000363762 77 ntBASIC3.56□□□□□ -1.84
HOXA4Q00056 RNA5SP366-201ENST00000365454 123 ntBASIC3.56□□□□□ -1.84
HOXA4Q00056 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
HOXA4Q00056 RNU6-1074P-201ENST00000383995 104 ntBASIC3.56□□□□□ -1.84
HOXA4Q00056 RNA5SP219-201ENST00000390940 113 ntBASIC3.56□□□□□ -1.84
HOXA4Q00056 AL139039.1-201ENST00000401900 692 ntBASIC3.56□□□□□ -1.84
HOXA4Q00056 MIR548K-201ENST00000408406 116 ntBASIC3.56□□□□□ -1.84
HOXA4Q00056 VN1R36P-201ENST00000414936 291 ntBASIC3.56□□□□□ -1.84
HOXA4Q00056 BX682237.1-201ENST00000415016 335 ntBASIC3.56□□□□□ -1.84
HOXA4Q00056 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC3.56□□□□□ -1.84
HOXA4Q00056 COX6B1P7-201ENST00000430845 235 ntBASIC3.56□□□□□ -1.84
HOXA4Q00056 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC3.56□□□□□ -1.84
HOXA4Q00056 NDUFA5P4-201ENST00000436704 385 ntBASIC3.56□□□□□ -1.84
HOXA4Q00056 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
HOXA4Q00056 RPL26P6-201ENST00000440913 438 ntBASIC3.56□□□□□ -1.84
HOXA4Q00056 AL121871.1-201ENST00000443413 436 ntBASIC3.56□□□□□ -1.84
HOXA4Q00056 VN1R17P-201ENST00000472048 1090 ntBASIC3.56□□□□□ -1.84
HOXA4Q00056 RN7SL860P-201ENST00000473738 223 ntBASIC3.56□□□□□ -1.84
HOXA4Q00056 RPS29P19-201ENST00000479709 171 ntBASIC3.56□□□□□ -1.84
HOXA4Q00056 AC091167.1-201ENST00000492017 396 ntBASIC3.56□□□□□ -1.84
HOXA4Q00056 MTCO1P29-201ENST00000496868 288 ntBASIC3.56□□□□□ -1.84
HOXA4Q00056 TRBVA-201ENST00000498804 316 ntBASIC3.56□□□□□ -1.84
HOXA4Q00056 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC3.56□□□□□ -1.84
HOXA4Q00056 TBCAP3-201ENST00000512475 312 ntBASIC3.56□□□□□ -1.84
HOXA4Q00056 LIAS-206ENST00000513731 826 ntTSL 5 BASIC3.56□□□□□ -1.84
HOXA4Q00056 SNORA31.9-201ENST00000516429 84 ntBASIC3.56□□□□□ -1.84
HOXA4Q00056 RNU6-566P-201ENST00000516790 107 ntBASIC3.56□□□□□ -1.84
HOXA4Q00056 RN7SKP60-201ENST00000516985 239 ntBASIC3.56□□□□□ -1.84
HOXA4Q00056 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC3.56□□□□□ -1.84
HOXA4Q00056 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC3.56□□□□□ -1.84
HOXA4Q00056 AC093249.1-201ENST00000567049 203 ntBASIC3.56□□□□□ -1.84
HOXA4Q00056 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC3.56□□□□□ -1.84
HOXA4Q00056 MIR4284-201ENST00000578924 81 ntBASIC3.56□□□□□ -1.84
HOXA4Q00056 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC3.56□□□□□ -1.84
HOXA4Q00056 AL138889.2-201ENST00000603883 242 ntBASIC3.56□□□□□ -1.84
HOXA4Q00056 AL590392.1-201ENST00000604960 446 ntBASIC3.56□□□□□ -1.84
HOXA4Q00056 AL133215.3-201ENST00000609801 448 ntBASIC3.56□□□□□ -1.84
HOXA4Q00056 AC064801.1-201ENST00000612025 407 ntBASIC3.56□□□□□ -1.84
HOXA4Q00056 SDR42E1P2-201ENST00000614861 481 ntBASIC3.56□□□□□ -1.84
HOXA4Q00056 AC084781.2-201ENST00000615568 161 ntBASIC3.56□□□□□ -1.84
HOXA4Q00056 AC103705.1-201ENST00000619013 241 ntBASIC3.56□□□□□ -1.84
HOXA4Q00056 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.56□□□□□ -1.84
HOXA4Q00056 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC3.56□□□□□ -1.84
HOXA4Q00056 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC3.56□□□□□ -1.84
HOXA4Q00056 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.56□□□□□ -1.84
HOXA4Q00056 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC3.56□□□□□ -1.84
HOXA4Q00056 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
HOXA4Q00056 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC3.55□□□□□ -1.84
HOXA4Q00056 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXA4Q00056 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
HOXA4Q00056 HSPA8P4-201ENST00000511877 1920 ntBASIC3.55□□□□□ -1.84
HOXA4Q00056 RNU1-15P-201ENST00000353977 144 ntBASIC3.55□□□□□ -1.84
HOXA4Q00056 MIR383-201ENST00000362257 73 ntBASIC3.55□□□□□ -1.84
HOXA4Q00056 RNU6-288P-201ENST00000363690 104 ntBASIC3.55□□□□□ -1.84
HOXA4Q00056 RNU6-43P-201ENST00000384302 107 ntBASIC3.55□□□□□ -1.84
HOXA4Q00056 RNU6-692P-201ENST00000384496 107 ntBASIC3.55□□□□□ -1.84
HOXA4Q00056 SNORD116-29-201ENST00000384516 83 ntBASIC3.55□□□□□ -1.84
HOXA4Q00056 SNORA16.2-201ENST00000390991 127 ntBASIC3.55□□□□□ -1.84
HOXA4Q00056 EIF4E2P1-201ENST00000393781 255 ntBASIC3.55□□□□□ -1.84
HOXA4Q00056 CISD1P1-201ENST00000393907 327 ntBASIC3.55□□□□□ -1.84
HOXA4Q00056 RNA5SP146-201ENST00000410743 123 ntBASIC3.55□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 110.5 ms