Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HOXA1P49639 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HOXA1P49639 AC137499.1-201ENST00000427602 88 ntBASIC3.12□□□□□ -1.91
HOXA1P49639 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC3.12□□□□□ -1.91
HOXA1P49639 MTATP6P23-201ENST00000440153 476 ntBASIC3.12□□□□□ -1.91
HOXA1P49639 RPL26P6-201ENST00000440913 438 ntBASIC3.12□□□□□ -1.91
HOXA1P49639 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC3.12□□□□□ -1.91
HOXA1P49639 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HOXA1P49639 RPL23AP20-201ENST00000447965 421 ntBASIC3.12□□□□□ -1.91
HOXA1P49639 RPS26P21-201ENST00000475397 348 ntBASIC3.12□□□□□ -1.91
HOXA1P49639 AC233702.1-201ENST00000482905 502 ntBASIC3.12□□□□□ -1.91
HOXA1P49639 TRBV12-2-201ENST00000489763 344 ntBASIC3.12□□□□□ -1.91
HOXA1P49639 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HOXA1P49639 AC116353.2-201ENST00000505332 712 ntBASIC3.12□□□□□ -1.91
HOXA1P49639 HSPD1P15-201ENST00000505573 1122 ntBASIC3.12□□□□□ -1.91
HOXA1P49639 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC3.12□□□□□ -1.91
HOXA1P49639 KLHL2P1-201ENST00000508691 521 ntBASIC3.12□□□□□ -1.91
HOXA1P49639 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC3.12□□□□□ -1.91
HOXA1P49639 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC3.12□□□□□ -1.91
HOXA1P49639 RNU6-410P-201ENST00000517006 107 ntBASIC3.12□□□□□ -1.91
HOXA1P49639 RAB9BP1-201ENST00000519581 626 ntBASIC3.12□□□□□ -1.91
HOXA1P49639 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.12□□□□□ -1.91
HOXA1P49639 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC3.12□□□□□ -1.91
HOXA1P49639 AC104383.1-201ENST00000530297 370 ntBASIC3.12□□□□□ -1.91
HOXA1P49639 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC3.12□□□□□ -1.91
HOXA1P49639 CYCSP29-201ENST00000533731 318 ntBASIC3.12□□□□□ -1.91
HOXA1P49639 AC018630.1-201ENST00000541376 925 ntBASIC3.12□□□□□ -1.91
HOXA1P49639 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC3.12□□□□□ -1.91
HOXA1P49639 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC3.12□□□□□ -1.91
HOXA1P49639 AC068135.2-201ENST00000569293 1028 ntBASIC3.12□□□□□ -1.91
HOXA1P49639 SNORA59B-202ENST00000578183 701 ntBASIC3.12□□□□□ -1.91
HOXA1P49639 MIR4700-201ENST00000578311 74 ntBASIC3.12□□□□□ -1.91
HOXA1P49639 AC105224.1-201ENST00000587055 421 ntBASIC3.12□□□□□ -1.91
HOXA1P49639 AC010928.3-201ENST00000587712 541 ntBASIC3.12□□□□□ -1.91
HOXA1P49639 AC008752.3-201ENST00000588113 712 ntBASIC3.12□□□□□ -1.91
HOXA1P49639 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC3.12□□□□□ -1.91
HOXA1P49639 ARF4P1-201ENST00000605447 541 ntBASIC3.12□□□□□ -1.91
HOXA1P49639 AL109618.2-201ENST00000605527 211 ntBASIC3.12□□□□□ -1.91
HOXA1P49639 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC3.12□□□□□ -1.91
HOXA1P49639 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.12□□□□□ -1.91
HOXA1P49639 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HOXA1P49639 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
HOXA1P49639 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HOXA1P49639 AL157700.1-201ENST00000561973 1432 ntBASIC3.11□□□□□ -1.91
HOXA1P49639 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC3.11□□□□□ -1.91
HOXA1P49639 DDX10P1-201ENST00000448545 1933 ntBASIC3.11□□□□□ -1.91
HOXA1P49639 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.11□□□□□ -1.91
HOXA1P49639 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.11□□□□□ -1.91
HOXA1P49639 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC3.11□□□□□ -1.91
HOXA1P49639 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
HOXA1P49639 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
HOXA1P49639 MIR148B-201ENST00000362252 99 ntBASIC3.11□□□□□ -1.91
HOXA1P49639 RNU6-534P-201ENST00000364877 106 ntBASIC3.11□□□□□ -1.91
HOXA1P49639 Y_RNA.295-201ENST00000364918 102 ntBASIC3.11□□□□□ -1.91
HOXA1P49639 Y_RNA.303-201ENST00000364998 94 ntBASIC3.11□□□□□ -1.91
HOXA1P49639 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC3.11□□□□□ -1.91
HOXA1P49639 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
HOXA1P49639 RNU6-1158P-201ENST00000391167 107 ntBASIC3.11□□□□□ -1.91
HOXA1P49639 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
HOXA1P49639 MTCO1P39-201ENST00000426148 480 ntBASIC3.11□□□□□ -1.91
HOXA1P49639 AL691449.1-201ENST00000426570 421 ntBASIC3.11□□□□□ -1.91
HOXA1P49639 OR2AS1P-201ENST00000427827 319 ntBASIC3.11□□□□□ -1.91
HOXA1P49639 GTF2IP20-201ENST00000431663 360 ntBASIC3.11□□□□□ -1.91
HOXA1P49639 RPS20P5-201ENST00000434808 360 ntBASIC3.11□□□□□ -1.91
HOXA1P49639 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC3.11□□□□□ -1.91
HOXA1P49639 AL353572.1-201ENST00000442490 417 ntBASIC3.11□□□□□ -1.91
HOXA1P49639 MTCO3P45-201ENST00000443036 613 ntBASIC3.11□□□□□ -1.91
HOXA1P49639 RPS29P33-201ENST00000456717 146 ntBASIC3.11□□□□□ -1.91
HOXA1P49639 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC3.11□□□□□ -1.91
HOXA1P49639 AC110792.1-201ENST00000491826 472 ntBASIC3.11□□□□□ -1.91
HOXA1P49639 AC093278.1-201ENST00000494700 600 ntBASIC3.11□□□□□ -1.91
HOXA1P49639 AC004062.1-201ENST00000509926 645 ntBASIC3.11□□□□□ -1.91
HOXA1P49639 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.11□□□□□ -1.91
HOXA1P49639 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC3.11□□□□□ -1.91
HOXA1P49639 RNU6-1281P-201ENST00000516223 105 ntBASIC3.11□□□□□ -1.91
HOXA1P49639 RNA5SP179-201ENST00000517284 121 ntBASIC3.11□□□□□ -1.91
HOXA1P49639 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC3.11□□□□□ -1.91
HOXA1P49639 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC3.11□□□□□ -1.91
HOXA1P49639 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC3.11□□□□□ -1.91
HOXA1P49639 RPL21P12-201ENST00000559810 515 ntBASIC3.11□□□□□ -1.91
HOXA1P49639 AC090877.1-201ENST00000561418 344 ntBASIC3.11□□□□□ -1.91
HOXA1P49639 MIR4277-201ENST00000578298 84 ntBASIC3.11□□□□□ -1.91
HOXA1P49639 AC006504.3-201ENST00000586818 523 ntBASIC3.11□□□□□ -1.91
HOXA1P49639 AP001029.3-201ENST00000588063 596 ntBASIC3.11□□□□□ -1.91
HOXA1P49639 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC3.11□□□□□ -1.91
HOXA1P49639 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC3.11□□□□□ -1.91
HOXA1P49639 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.11□□□□□ -1.91
HOXA1P49639 DPPA3P3-201ENST00000603842 430 ntBASIC3.11□□□□□ -1.91
HOXA1P49639 AC007621.1-201ENST00000604544 437 ntBASIC3.11□□□□□ -1.91
HOXA1P49639 AC007363.1-201ENST00000604736 620 ntBASIC3.11□□□□□ -1.91
HOXA1P49639 AC091167.4-201ENST00000605079 184 ntBASIC3.11□□□□□ -1.91
HOXA1P49639 AP001330.5-201ENST00000607176 411 ntBASIC3.11□□□□□ -1.91
HOXA1P49639 AC114781.5-201ENST00000615297 108 ntBASIC3.11□□□□□ -1.91
HOXA1P49639 MIR6130-201ENST00000619419 109 ntBASIC3.11□□□□□ -1.91
HOXA1P49639 AC093648.1-201ENST00000623546 606 ntBASIC3.11□□□□□ -1.91
HOXA1P49639 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC3.11□□□□□ -1.91
HOXA1P49639 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
HOXA1P49639 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
HOXA1P49639 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
HOXA1P49639 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms