Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 NTS-203ENST00000551529 801 ntTSL 3 BASIC1.92□□□□□ -2.1
CUX1P39880 AC006338.1-201ENST00000618453 749 ntBASIC1.92□□□□□ -2.1
CUX1P39880 DDX43P2-201ENST00000604753 1354 ntBASIC1.91□□□□□ -2.1
CUX1P39880 SNORA6-201ENST00000384033 151 ntBASIC1.91□□□□□ -2.1
CUX1P39880 RNY1P4-201ENST00000384595 115 ntBASIC1.91□□□□□ -2.1
CUX1P39880 STAT4-203ENST00000409995 709 ntTSL 5 BASIC1.91□□□□□ -2.1
CUX1P39880 AC093852.1-201ENST00000503587 266 ntBASIC1.91□□□□□ -2.1
CUX1P39880 AC010627.1-201ENST00000503819 1294 ntBASIC1.91□□□□□ -2.1
CUX1P39880 HMGB3P3-201ENST00000510526 400 ntBASIC1.91□□□□□ -2.1
CUX1P39880 OR5H4P-201ENST00000510851 923 ntBASIC1.91□□□□□ -2.1
CUX1P39880 AC024619.4-201ENST00000580924 316 ntBASIC1.91□□□□□ -2.1
CUX1P39880 FAM106CP-201ENST00000582212 507 ntBASIC1.91□□□□□ -2.1
CUX1P39880 SNORD84-203ENST00000584275 78 ntBASIC1.91□□□□□ -2.1
CUX1P39880 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC1.91□□□□□ -2.1
CUX1P39880 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC1.91□□□□□ -2.1
CUX1P39880 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC1.91□□□□□ -2.1
CUX1P39880 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC1.91□□□□□ -2.1
CUX1P39880 Y_RNA.251-201ENST00000364551 99 ntBASIC1.91□□□□□ -2.1
CUX1P39880 RNU4-7P-201ENST00000364758 141 ntBASIC1.91□□□□□ -2.1
CUX1P39880 RNA5SP105-201ENST00000391123 113 ntBASIC1.91□□□□□ -2.1
CUX1P39880 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
CUX1P39880 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC1.91□□□□□ -2.1
CUX1P39880 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC1.91□□□□□ -2.1
CUX1P39880 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.91□□□□□ -2.1
CUX1P39880 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC1.91□□□□□ -2.1
CUX1P39880 SNORA31.23-201ENST00000517219 133 ntBASIC1.91□□□□□ -2.1
CUX1P39880 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.91□□□□□ -2.1
CUX1P39880 MIR5000-201ENST00000577717 103 ntBASIC1.91□□□□□ -2.1
CUX1P39880 AC008962.1-201ENST00000605729 304 ntBASIC1.91□□□□□ -2.1
CUX1P39880 AC007275.1-201ENST00000621243 671 ntBASIC1.91□□□□□ -2.1
CUX1P39880 RNU1-148P-201ENST00000384472 162 ntBASIC1.9□□□□□ -2.11
CUX1P39880 RNU6-1105P-201ENST00000384774 107 ntBASIC1.9□□□□□ -2.11
CUX1P39880 HMGN1P14-201ENST00000412459 517 ntBASIC1.9□□□□□ -2.11
CUX1P39880 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
CUX1P39880 RNU6-943P-201ENST00000516960 98 ntBASIC1.9□□□□□ -2.11
CUX1P39880 CR383656.8-201ENST00000549046 145 ntBASIC1.9□□□□□ -2.11
CUX1P39880 SETP7-201ENST00000552169 453 ntBASIC1.9□□□□□ -2.11
CUX1P39880 AC025918.2-201ENST00000558683 763 ntBASIC1.9□□□□□ -2.11
CUX1P39880 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC1.9□□□□□ -2.11
CUX1P39880 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC1.9□□□□□ -2.11
CUX1P39880 RNU6-37P-201ENST00000362692 107 ntBASIC1.89□□□□□ -2.11
CUX1P39880 RNU6-11P-201ENST00000364234 107 ntBASIC1.89□□□□□ -2.11
CUX1P39880 RPL26P37-201ENST00000411983 438 ntBASIC1.89□□□□□ -2.11
CUX1P39880 SNRPEP10-201ENST00000420249 274 ntBASIC1.89□□□□□ -2.11
CUX1P39880 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC1.89□□□□□ -2.11
CUX1P39880 AL121871.1-201ENST00000443413 436 ntBASIC1.89□□□□□ -2.11
CUX1P39880 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC1.89□□□□□ -2.11
CUX1P39880 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC1.89□□□□□ -2.11
CUX1P39880 RNA5SP476-201ENST00000516613 103 ntBASIC1.89□□□□□ -2.11
CUX1P39880 AL031274.2-201ENST00000599419 203 ntBASIC1.89□□□□□ -2.11
CUX1P39880 AC079597.1-201ENST00000624306 508 ntBASIC1.89□□□□□ -2.11
CUX1P39880 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.89□□□□□ -2.11
CUX1P39880 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC1.89□□□□□ -2.11
CUX1P39880 Y_RNA.68-201ENST00000362881 102 ntBASIC1.88□□□□□ -2.11
CUX1P39880 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC1.88□□□□□ -2.11
CUX1P39880 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC1.88□□□□□ -2.11
CUX1P39880 ARL5AP3-201ENST00000439327 386 ntBASIC1.88□□□□□ -2.11
CUX1P39880 RPL30P12-201ENST00000474666 353 ntBASIC1.88□□□□□ -2.11
CUX1P39880 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC1.88□□□□□ -2.11
CUX1P39880 MRPL42P6-201ENST00000486397 371 ntBASIC1.88□□□□□ -2.11
CUX1P39880 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC1.88□□□□□ -2.11
CUX1P39880 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC1.88□□□□□ -2.11
CUX1P39880 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
CUX1P39880 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC1.88□□□□□ -2.11
CUX1P39880 AL390240.1-201ENST00000612950 384 ntBASIC1.88□□□□□ -2.11
CUX1P39880 AC068831.7-201ENST00000616954 363 ntBASIC1.88□□□□□ -2.11
CUX1P39880 AC006065.5-201ENST00000623427 349 ntBASIC1.88□□□□□ -2.11
CUX1P39880 SNORA18.2-201ENST00000383865 132 ntBASIC1.87□□□□□ -2.11
CUX1P39880 AC087343.1-201ENST00000477341 475 ntBASIC1.87□□□□□ -2.11
CUX1P39880 CA3-AS1-203ENST00000524052 430 ntTSL 2 BASIC1.87□□□□□ -2.11
CUX1P39880 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC1.87□□□□□ -2.11
CUX1P39880 AL133507.1-201ENST00000605269 557 ntBASIC1.87□□□□□ -2.11
CUX1P39880 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC1.87□□□□□ -2.11
CUX1P39880 RNU6-516P-201ENST00000411381 104 ntBASIC1.86□□□□□ -2.11
CUX1P39880 Z75741.2-201ENST00000417272 1167 ntBASIC1.86□□□□□ -2.11
CUX1P39880 AC108059.3-201ENST00000456388 214 ntBASIC1.86□□□□□ -2.11
CUX1P39880 NF1P3-201ENST00000457709 450 ntBASIC1.86□□□□□ -2.11
CUX1P39880 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.86□□□□□ -2.11
CUX1P39880 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC1.86□□□□□ -2.11
CUX1P39880 RNU6-113P-201ENST00000516653 101 ntBASIC1.86□□□□□ -2.11
CUX1P39880 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC1.86□□□□□ -2.11
CUX1P39880 AC118942.1-201ENST00000529674 1035 ntBASIC1.86□□□□□ -2.11
CUX1P39880 NBEAP1-201ENST00000554452 979 ntBASIC1.86□□□□□ -2.11
CUX1P39880 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC1.86□□□□□ -2.11
CUX1P39880 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC1.86□□□□□ -2.11
CUX1P39880 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC1.86□□□□□ -2.11
CUX1P39880 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
CUX1P39880 RNA5SP457-201ENST00000363657 124 ntBASIC1.86□□□□□ -2.11
CUX1P39880 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC1.86□□□□□ -2.11
CUX1P39880 CYCSP33-201ENST00000414485 327 ntBASIC1.86□□□□□ -2.11
CUX1P39880 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC1.86□□□□□ -2.11
CUX1P39880 AL590233.1-201ENST00000430017 456 ntBASIC1.86□□□□□ -2.11
CUX1P39880 AL353898.1-201ENST00000444055 238 ntBASIC1.86□□□□□ -2.11
CUX1P39880 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC1.86□□□□□ -2.11
CUX1P39880 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC1.86□□□□□ -2.11
CUX1P39880 MTATP6P22-201ENST00000507369 598 ntBASIC1.86□□□□□ -2.11
CUX1P39880 CDC42P4-201ENST00000510507 563 ntBASIC1.86□□□□□ -2.11
CUX1P39880 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC1.86□□□□□ -2.11
CUX1P39880 RNU4-60P-201ENST00000517239 135 ntBASIC1.86□□□□□ -2.11
CUX1P39880 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC1.86□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms