Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 Y_RNA.38-201ENST00000362617 102 ntBASIC4.25□□□□□ -1.73
SMARCA1P28370 RNU6-867P-201ENST00000364956 107 ntBASIC4.25□□□□□ -1.73
SMARCA1P28370 SNORA62.3-201ENST00000365110 153 ntBASIC4.25□□□□□ -1.73
SMARCA1P28370 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
SMARCA1P28370 RNU6-1074P-201ENST00000383995 104 ntBASIC4.25□□□□□ -1.73
SMARCA1P28370 Y_RNA.481-201ENST00000384373 102 ntBASIC4.25□□□□□ -1.73
SMARCA1P28370 AL035423.1-201ENST00000420331 213 ntBASIC4.25□□□□□ -1.73
SMARCA1P28370 AL159169.1-201ENST00000421119 127 ntBASIC4.25□□□□□ -1.73
SMARCA1P28370 RPL21P66-201ENST00000426566 466 ntBASIC4.25□□□□□ -1.73
SMARCA1P28370 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC4.25□□□□□ -1.73
SMARCA1P28370 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC4.25□□□□□ -1.73
SMARCA1P28370 RPL35AP22-201ENST00000436855 335 ntBASIC4.25□□□□□ -1.73
SMARCA1P28370 AF228730.2-201ENST00000438784 848 ntBASIC4.25□□□□□ -1.73
SMARCA1P28370 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC4.25□□□□□ -1.73
SMARCA1P28370 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC4.25□□□□□ -1.73
SMARCA1P28370 VN1R34P-201ENST00000447387 883 ntBASIC4.25□□□□□ -1.73
SMARCA1P28370 DPPA3P1-201ENST00000448050 469 ntBASIC4.25□□□□□ -1.73
SMARCA1P28370 RPS3AP46-201ENST00000448352 682 ntBASIC4.25□□□□□ -1.73
SMARCA1P28370 AC234775.1-201ENST00000454247 670 ntBASIC4.25□□□□□ -1.73
SMARCA1P28370 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC4.25□□□□□ -1.73
SMARCA1P28370 SNORD105B-201ENST00000458770 79 ntBASIC4.25□□□□□ -1.73
SMARCA1P28370 RN7SL93P-201ENST00000463035 293 ntBASIC4.25□□□□□ -1.73
SMARCA1P28370 RPL36AP51-201ENST00000487216 318 ntBASIC4.25□□□□□ -1.73
SMARCA1P28370 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC4.25□□□□□ -1.73
SMARCA1P28370 HMGN1P11-201ENST00000508668 303 ntBASIC4.25□□□□□ -1.73
SMARCA1P28370 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC4.25□□□□□ -1.73
SMARCA1P28370 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC4.25□□□□□ -1.73
SMARCA1P28370 CD36-221ENST00000534394 1741 ntTSL 2 BASIC4.25□□□□□ -1.73
SMARCA1P28370 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC4.25□□□□□ -1.73
SMARCA1P28370 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC4.25□□□□□ -1.73
SMARCA1P28370 AC105224.1-201ENST00000587055 421 ntBASIC4.25□□□□□ -1.73
SMARCA1P28370 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC4.25□□□□□ -1.73
SMARCA1P28370 AC008536.2-201ENST00000607284 349 ntBASIC4.25□□□□□ -1.73
SMARCA1P28370 MIR486-1-201ENST00000612171 68 ntBASIC4.25□□□□□ -1.73
SMARCA1P28370 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC4.25□□□□□ -1.73
SMARCA1P28370 U6.42-201ENST00000618440 107 ntBASIC4.25□□□□□ -1.73
SMARCA1P28370 AC243312.2-201ENST00000623340 601 ntBASIC4.25□□□□□ -1.73
SMARCA1P28370 AC005609.4-201ENST00000625071 447 ntBASIC4.25□□□□□ -1.73
SMARCA1P28370 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
SMARCA1P28370 ZNF680P1-201ENST00000436625 1469 ntBASIC4.24□□□□□ -1.73
SMARCA1P28370 MIR423-201ENST00000362201 94 ntBASIC4.24□□□□□ -1.73
SMARCA1P28370 RNU6-600P-201ENST00000362524 99 ntBASIC4.24□□□□□ -1.73
SMARCA1P28370 RNA5SP322-201ENST00000363617 119 ntBASIC4.24□□□□□ -1.73
SMARCA1P28370 RNU6-1322P-201ENST00000364309 107 ntBASIC4.24□□□□□ -1.73
SMARCA1P28370 Y_RNA.573-201ENST00000384763 105 ntBASIC4.24□□□□□ -1.73
SMARCA1P28370 RNU6-328P-201ENST00000390887 106 ntBASIC4.24□□□□□ -1.73
SMARCA1P28370 RNU6-1158P-201ENST00000391167 107 ntBASIC4.24□□□□□ -1.73
SMARCA1P28370 RNU6-908P-201ENST00000410160 94 ntBASIC4.24□□□□□ -1.73
SMARCA1P28370 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC4.24□□□□□ -1.73
SMARCA1P28370 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC4.24□□□□□ -1.73
SMARCA1P28370 CCDC58P2-201ENST00000417131 366 ntBASIC4.24□□□□□ -1.73
SMARCA1P28370 AL109913.1-201ENST00000421173 514 ntBASIC4.24□□□□□ -1.73
SMARCA1P28370 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC4.24□□□□□ -1.73
SMARCA1P28370 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC4.24□□□□□ -1.73
SMARCA1P28370 AL606489.2-201ENST00000433886 234 ntBASIC4.24□□□□□ -1.73
SMARCA1P28370 VDAC1P3-201ENST00000434069 851 ntBASIC4.24□□□□□ -1.73
SMARCA1P28370 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC4.24□□□□□ -1.73
SMARCA1P28370 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC4.24□□□□□ -1.73
SMARCA1P28370 AC079781.2-201ENST00000446424 169 ntBASIC4.24□□□□□ -1.73
SMARCA1P28370 AC016696.1-201ENST00000446949 318 ntBASIC4.24□□□□□ -1.73
SMARCA1P28370 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC4.24□□□□□ -1.73
SMARCA1P28370 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC4.24□□□□□ -1.73
SMARCA1P28370 RPS29P25-201ENST00000481709 171 ntBASIC4.24□□□□□ -1.73
SMARCA1P28370 NIPA2P2-201ENST00000496376 1083 ntBASIC4.24□□□□□ -1.73
SMARCA1P28370 FCF1P3-201ENST00000496394 590 ntBASIC4.24□□□□□ -1.73
SMARCA1P28370 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC4.24□□□□□ -1.73
SMARCA1P28370 RNU6-579P-201ENST00000516879 102 ntBASIC4.24□□□□□ -1.73
SMARCA1P28370 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC4.24□□□□□ -1.73
SMARCA1P28370 IGKV2-23-201ENST00000518729 323 ntBASIC4.24□□□□□ -1.73
SMARCA1P28370 TRMT10BP1-201ENST00000519377 943 ntBASIC4.24□□□□□ -1.73
SMARCA1P28370 AC118273.2-201ENST00000532092 465 ntBASIC4.24□□□□□ -1.73
SMARCA1P28370 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC4.24□□□□□ -1.73
SMARCA1P28370 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC4.24□□□□□ -1.73
SMARCA1P28370 AC125611.2-201ENST00000551907 647 ntBASIC4.24□□□□□ -1.73
SMARCA1P28370 AC034105.3-201ENST00000565294 442 ntBASIC4.24□□□□□ -1.73
SMARCA1P28370 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC4.24□□□□□ -1.73
SMARCA1P28370 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC4.24□□□□□ -1.73
SMARCA1P28370 AC006133.1-201ENST00000617106 264 ntBASIC4.24□□□□□ -1.73
SMARCA1P28370 AL353748.2-201ENST00000622148 471 ntBASIC4.24□□□□□ -1.73
SMARCA1P28370 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
SMARCA1P28370 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
SMARCA1P28370 ZNF285B-201ENST00000561698 1767 ntBASIC4.24□□□□□ -1.73
SMARCA1P28370 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
SMARCA1P28370 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC4.23□□□□□ -1.73
SMARCA1P28370 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.23□□□□□ -1.73
SMARCA1P28370 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
SMARCA1P28370 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
SMARCA1P28370 SNORA5A-201ENST00000384111 134 ntBASIC4.23□□□□□ -1.73
SMARCA1P28370 MIR558-201ENST00000384920 94 ntBASIC4.23□□□□□ -1.73
SMARCA1P28370 FGF7P8-201ENST00000402994 292 ntBASIC4.23□□□□□ -1.73
SMARCA1P28370 HSPE1P8-201ENST00000406997 288 ntBASIC4.23□□□□□ -1.73
SMARCA1P28370 RNU2-36P-201ENST00000410361 191 ntBASIC4.23□□□□□ -1.73
SMARCA1P28370 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC4.23□□□□□ -1.73
SMARCA1P28370 UBE2FP1-201ENST00000416536 447 ntBASIC4.23□□□□□ -1.73
SMARCA1P28370 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC4.23□□□□□ -1.73
SMARCA1P28370 CYCSP4-201ENST00000429682 331 ntBASIC4.23□□□□□ -1.73
SMARCA1P28370 RPS20P5-201ENST00000434808 360 ntBASIC4.23□□□□□ -1.73
SMARCA1P28370 HMGB3P12-201ENST00000438745 556 ntBASIC4.23□□□□□ -1.73
SMARCA1P28370 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC4.23□□□□□ -1.73
SMARCA1P28370 AC140076.1-201ENST00000449897 361 ntBASIC4.23□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 158.4 ms