Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC107081.1-201ENST00000414975 361 ntBASIC1.68□□□□□ -2.14
HLA-DMBP28068 Z98742.3-201ENST00000418637 326 ntBASIC1.68□□□□□ -2.14
HLA-DMBP28068 SEPT2P1-201ENST00000419651 180 ntBASIC1.68□□□□□ -2.14
HLA-DMBP28068 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC1.68□□□□□ -2.14
HLA-DMBP28068 MTCO3P1-205ENST00000422088 832 ntBASIC1.68□□□□□ -2.14
HLA-DMBP28068 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC1.68□□□□□ -2.14
HLA-DMBP28068 BLOC1S2P1-201ENST00000428431 301 ntBASIC1.68□□□□□ -2.14
HLA-DMBP28068 BNIP3P2-201ENST00000441221 577 ntBASIC1.68□□□□□ -2.14
HLA-DMBP28068 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC1.68□□□□□ -2.14
HLA-DMBP28068 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC1.68□□□□□ -2.14
HLA-DMBP28068 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC1.68□□□□□ -2.14
HLA-DMBP28068 RPL7P55-201ENST00000450522 746 ntBASIC1.68□□□□□ -2.14
HLA-DMBP28068 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC1.68□□□□□ -2.14
HLA-DMBP28068 MTND2P3-201ENST00000452458 470 ntBASIC1.68□□□□□ -2.14
HLA-DMBP28068 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC1.68□□□□□ -2.14
HLA-DMBP28068 SNORA48.9-201ENST00000516419 162 ntBASIC1.68□□□□□ -2.14
HLA-DMBP28068 AC022634.1-201ENST00000520765 532 ntBASIC1.68□□□□□ -2.14
HLA-DMBP28068 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC1.68□□□□□ -2.14
HLA-DMBP28068 AC025755.1-201ENST00000521306 278 ntBASIC1.68□□□□□ -2.14
HLA-DMBP28068 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC1.68□□□□□ -2.14
HLA-DMBP28068 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC1.68□□□□□ -2.14
HLA-DMBP28068 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC1.68□□□□□ -2.14
HLA-DMBP28068 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC1.68□□□□□ -2.14
HLA-DMBP28068 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC1.68□□□□□ -2.14
HLA-DMBP28068 AC124947.2-202ENST00000552735 133 ntBASIC1.68□□□□□ -2.14
HLA-DMBP28068 AL391261.3-201ENST00000557194 520 ntBASIC1.68□□□□□ -2.14
HLA-DMBP28068 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC1.68□□□□□ -2.14
HLA-DMBP28068 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC1.68□□□□□ -2.14
HLA-DMBP28068 LRRC37A5P-203ENST00000580181 585 ntBASIC1.68□□□□□ -2.14
HLA-DMBP28068 MIR5007-201ENST00000583098 95 ntBASIC1.68□□□□□ -2.14
HLA-DMBP28068 AC002984.1-201ENST00000591692 448 ntBASIC1.68□□□□□ -2.14
HLA-DMBP28068 AL355877.2-201ENST00000603670 358 ntBASIC1.68□□□□□ -2.14
HLA-DMBP28068 DUXAP11-201ENST00000603858 526 ntBASIC1.68□□□□□ -2.14
HLA-DMBP28068 AC136601.2-201ENST00000604356 474 ntBASIC1.68□□□□□ -2.14
HLA-DMBP28068 AL450472.3-201ENST00000615578 367 ntBASIC1.68□□□□□ -2.14
HLA-DMBP28068 AC009159.1-201ENST00000618386 642 ntBASIC1.68□□□□□ -2.14
HLA-DMBP28068 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.68□□□□□ -2.14
HLA-DMBP28068 AL359851.1-201ENST00000569460 4997 ntBASIC1.68□□□□□ -2.14
HLA-DMBP28068 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC1.67□□□□□ -2.14
HLA-DMBP28068 AC006020.1-201ENST00000420179 1854 ntBASIC1.67□□□□□ -2.14
HLA-DMBP28068 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC1.67□□□□□ -2.14
HLA-DMBP28068 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
HLA-DMBP28068 RNU6ATAC37P-201ENST00000408328 131 ntBASIC1.67□□□□□ -2.14
HLA-DMBP28068 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC1.67□□□□□ -2.14
HLA-DMBP28068 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC1.67□□□□□ -2.14
HLA-DMBP28068 AC007742.1-201ENST00000425789 329 ntBASIC1.67□□□□□ -2.14
HLA-DMBP28068 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC1.67□□□□□ -2.14
HLA-DMBP28068 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC1.67□□□□□ -2.14
HLA-DMBP28068 MTND2P5-201ENST00000432656 1006 ntBASIC1.67□□□□□ -2.14
HLA-DMBP28068 AL512661.1-201ENST00000434586 1253 ntBASIC1.67□□□□□ -2.14
HLA-DMBP28068 ELOCP26-201ENST00000436067 329 ntBASIC1.67□□□□□ -2.14
HLA-DMBP28068 AL049734.2-201ENST00000441066 616 ntBASIC1.67□□□□□ -2.14
HLA-DMBP28068 PIGFP3-201ENST00000441918 722 ntBASIC1.67□□□□□ -2.14
HLA-DMBP28068 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC1.67□□□□□ -2.14
HLA-DMBP28068 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC1.67□□□□□ -2.14
HLA-DMBP28068 AL513124.1-201ENST00000450410 614 ntBASIC1.67□□□□□ -2.14
HLA-DMBP28068 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC1.67□□□□□ -2.14
HLA-DMBP28068 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC1.67□□□□□ -2.14
HLA-DMBP28068 AC114786.4-201ENST00000508771 728 ntBASIC1.67□□□□□ -2.14
HLA-DMBP28068 AC114797.1-201ENST00000514003 728 ntBASIC1.67□□□□□ -2.14
HLA-DMBP28068 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC1.67□□□□□ -2.14
HLA-DMBP28068 AP002748.2-201ENST00000528671 348 ntBASIC1.67□□□□□ -2.14
HLA-DMBP28068 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC1.67□□□□□ -2.14
HLA-DMBP28068 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC1.67□□□□□ -2.14
HLA-DMBP28068 AKIRIN1P1-201ENST00000547384 544 ntBASIC1.67□□□□□ -2.14
HLA-DMBP28068 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC1.67□□□□□ -2.14
HLA-DMBP28068 AL138976.2-201ENST00000563989 694 ntBASIC1.67□□□□□ -2.14
HLA-DMBP28068 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC1.67□□□□□ -2.14
HLA-DMBP28068 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC1.67□□□□□ -2.14
HLA-DMBP28068 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC1.67□□□□□ -2.14
HLA-DMBP28068 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC1.67□□□□□ -2.14
HLA-DMBP28068 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC1.67□□□□□ -2.14
HLA-DMBP28068 AC080013.4-201ENST00000607624 649 ntBASIC1.67□□□□□ -2.14
HLA-DMBP28068 AC092954.1-201ENST00000609121 445 ntBASIC1.67□□□□□ -2.14
HLA-DMBP28068 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC1.67□□□□□ -2.14
HLA-DMBP28068 AC087241.4-201ENST00000612441 480 ntBASIC1.67□□□□□ -2.14
HLA-DMBP28068 UBE2Q2P6-201ENST00000612666 153 ntBASIC1.67□□□□□ -2.14
HLA-DMBP28068 AC025594.3-201ENST00000613068 790 ntBASIC1.67□□□□□ -2.14
HLA-DMBP28068 MIR6130-201ENST00000619419 109 ntBASIC1.67□□□□□ -2.14
HLA-DMBP28068 AL445493.3-201ENST00000619568 477 ntBASIC1.67□□□□□ -2.14
HLA-DMBP28068 MIR6873-201ENST00000622788 63 ntBASIC1.67□□□□□ -2.14
HLA-DMBP28068 AC004009.2-201ENST00000623016 728 ntBASIC1.67□□□□□ -2.14
HLA-DMBP28068 U6.101-201ENST00000637707 76 ntBASIC1.67□□□□□ -2.14
HLA-DMBP28068 MTND4P21-201ENST00000453886 1357 ntBASIC1.67□□□□□ -2.14
HLA-DMBP28068 MTND4P35-201ENST00000604257 1375 ntBASIC1.67□□□□□ -2.14
HLA-DMBP28068 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC1.67□□□□□ -2.14
HLA-DMBP28068 RNU6-492P-201ENST00000363035 104 ntBASIC1.66□□□□□ -2.14
HLA-DMBP28068 SUGT1P1-201ENST00000379514 476 ntBASIC1.66□□□□□ -2.14
HLA-DMBP28068 RNU6-217P-201ENST00000384164 104 ntBASIC1.66□□□□□ -2.14
HLA-DMBP28068 AP002784.2-201ENST00000397300 549 ntBASIC1.66□□□□□ -2.14
HLA-DMBP28068 MIR1261-201ENST00000408659 82 ntBASIC1.66□□□□□ -2.14
HLA-DMBP28068 RNU2-40P-201ENST00000410833 196 ntBASIC1.66□□□□□ -2.14
HLA-DMBP28068 RN7SKP192-201ENST00000411291 327 ntBASIC1.66□□□□□ -2.14
HLA-DMBP28068 RPS7P9-201ENST00000414704 586 ntBASIC1.66□□□□□ -2.14
HLA-DMBP28068 TAF13P2-201ENST00000416876 286 ntBASIC1.66□□□□□ -2.14
HLA-DMBP28068 NPM1P11-201ENST00000417106 855 ntBASIC1.66□□□□□ -2.14
HLA-DMBP28068 CCDC58P2-201ENST00000417131 366 ntBASIC1.66□□□□□ -2.14
HLA-DMBP28068 AC018630.2-202ENST00000422992 927 ntBASIC1.66□□□□□ -2.14
HLA-DMBP28068 AC019178.2-201ENST00000423595 505 ntBASIC1.66□□□□□ -2.14
HLA-DMBP28068 FAM204CP-201ENST00000424489 642 ntBASIC1.66□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 90.7 ms