Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC5.21□□□□□ -1.58
LIG1P18858 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC5.21□□□□□ -1.58
LIG1P18858 RPL21P112-201ENST00000434403 463 ntBASIC5.21□□□□□ -1.58
LIG1P18858 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC5.21□□□□□ -1.58
LIG1P18858 Z98949.2-201ENST00000440996 144 ntBASIC5.21□□□□□ -1.58
LIG1P18858 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC5.21□□□□□ -1.58
LIG1P18858 ISCUP1-201ENST00000454451 448 ntBASIC5.21□□□□□ -1.58
LIG1P18858 RPS29P33-201ENST00000456717 146 ntBASIC5.21□□□□□ -1.58
LIG1P18858 RN7SL738P-201ENST00000470264 297 ntBASIC5.21□□□□□ -1.58
LIG1P18858 RPS27AP1-201ENST00000475545 471 ntBASIC5.21□□□□□ -1.58
LIG1P18858 RPL36AP41-201ENST00000493820 306 ntBASIC5.21□□□□□ -1.58
LIG1P18858 AC015911.1-201ENST00000495111 156 ntBASIC5.21□□□□□ -1.58
LIG1P18858 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC5.21□□□□□ -1.58
LIG1P18858 FTH1P9-201ENST00000513251 355 ntBASIC5.21□□□□□ -1.58
LIG1P18858 RNU6-1016P-201ENST00000516689 94 ntBASIC5.21□□□□□ -1.58
LIG1P18858 RNU6-685P-201ENST00000517088 95 ntBASIC5.21□□□□□ -1.58
LIG1P18858 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC5.21□□□□□ -1.58
LIG1P18858 AC100870.1-201ENST00000522035 505 ntBASIC5.21□□□□□ -1.58
LIG1P18858 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC5.21□□□□□ -1.58
LIG1P18858 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC5.21□□□□□ -1.58
LIG1P18858 AP002404.1-201ENST00000532005 451 ntBASIC5.21□□□□□ -1.58
LIG1P18858 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC5.21□□□□□ -1.58
LIG1P18858 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC5.21□□□□□ -1.58
LIG1P18858 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC5.21□□□□□ -1.58
LIG1P18858 AL669831.4-202ENST00000590817 238 ntBASIC5.21□□□□□ -1.58
LIG1P18858 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC5.21□□□□□ -1.58
LIG1P18858 DUSP12P1-201ENST00000612874 516 ntBASIC5.21□□□□□ -1.58
LIG1P18858 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC5.21□□□□□ -1.58
LIG1P18858 AL355365.1-201ENST00000616480 294 ntBASIC5.21□□□□□ -1.58
LIG1P18858 AC007485.1-201ENST00000616755 206 ntBASIC5.21□□□□□ -1.58
LIG1P18858 AL162373.1-201ENST00000620433 407 ntBASIC5.21□□□□□ -1.58
LIG1P18858 MIR7154-201ENST00000620673 73 ntBASIC5.21□□□□□ -1.58
LIG1P18858 AC091925.2-201ENST00000625059 256 ntBASIC5.21□□□□□ -1.58
LIG1P18858 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC5.21□□□□□ -1.58
LIG1P18858 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
LIG1P18858 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
LIG1P18858 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC5.2□□□□□ -1.58
LIG1P18858 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
LIG1P18858 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
LIG1P18858 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
LIG1P18858 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
LIG1P18858 RNA5SP502-201ENST00000362694 119 ntBASIC5.2□□□□□ -1.58
LIG1P18858 Y_RNA.364-201ENST00000365532 101 ntBASIC5.2□□□□□ -1.58
LIG1P18858 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC5.2□□□□□ -1.58
LIG1P18858 RNU6-398P-201ENST00000384143 109 ntBASIC5.2□□□□□ -1.58
LIG1P18858 RNU6-432P-201ENST00000384196 109 ntBASIC5.2□□□□□ -1.58
LIG1P18858 SNORD3H-201ENST00000384486 214 ntBASIC5.2□□□□□ -1.58
LIG1P18858 RNA5SP219-201ENST00000390940 113 ntBASIC5.2□□□□□ -1.58
LIG1P18858 RNU4-25P-201ENST00000410569 230 ntBASIC5.2□□□□□ -1.58
LIG1P18858 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC5.2□□□□□ -1.58
LIG1P18858 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC5.2□□□□□ -1.58
LIG1P18858 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC5.2□□□□□ -1.58
LIG1P18858 USP9YP16-201ENST00000430287 407 ntBASIC5.2□□□□□ -1.58
LIG1P18858 H2AFZP6-201ENST00000444403 394 ntBASIC5.2□□□□□ -1.58
LIG1P18858 USP9YP23-201ENST00000455085 407 ntBASIC5.2□□□□□ -1.58
LIG1P18858 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC5.2□□□□□ -1.58
LIG1P18858 AC010469.1-201ENST00000463864 576 ntBASIC5.2□□□□□ -1.58
LIG1P18858 RPS20P21-201ENST00000466859 343 ntBASIC5.2□□□□□ -1.58
LIG1P18858 RPL23AP65-201ENST00000475608 468 ntBASIC5.2□□□□□ -1.58
LIG1P18858 HMGB1P30-201ENST00000492455 606 ntBASIC5.2□□□□□ -1.58
LIG1P18858 AC108022.1-201ENST00000493466 478 ntBASIC5.2□□□□□ -1.58
LIG1P18858 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC5.2□□□□□ -1.58
LIG1P18858 MRPS35P2-201ENST00000508242 191 ntBASIC5.2□□□□□ -1.58
LIG1P18858 AC108078.2-201ENST00000510750 236 ntBASIC5.2□□□□□ -1.58
LIG1P18858 RNU6-27P-201ENST00000516146 107 ntBASIC5.2□□□□□ -1.58
LIG1P18858 Vault.1-201ENST00000516474 102 ntBASIC5.2□□□□□ -1.58
LIG1P18858 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC5.2□□□□□ -1.58
LIG1P18858 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC5.2□□□□□ -1.58
LIG1P18858 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC5.2□□□□□ -1.58
LIG1P18858 SETP7-201ENST00000552169 453 ntBASIC5.2□□□□□ -1.58
LIG1P18858 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
LIG1P18858 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC5.2□□□□□ -1.58
LIG1P18858 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC5.2□□□□□ -1.58
LIG1P18858 MIR4330-201ENST00000579077 105 ntBASIC5.2□□□□□ -1.58
LIG1P18858 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC5.2□□□□□ -1.58
LIG1P18858 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC5.2□□□□□ -1.58
LIG1P18858 AC073539.2-201ENST00000597113 165 ntBASIC5.2□□□□□ -1.58
LIG1P18858 MIR7703-201ENST00000620784 77 ntBASIC5.2□□□□□ -1.58
LIG1P18858 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
LIG1P18858 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
LIG1P18858 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
LIG1P18858 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
LIG1P18858 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
LIG1P18858 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
LIG1P18858 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
LIG1P18858 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
LIG1P18858 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC5.2□□□□□ -1.58
LIG1P18858 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
LIG1P18858 GABPAP-201ENST00000419271 1356 ntBASIC5.19□□□□□ -1.58
LIG1P18858 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
LIG1P18858 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
LIG1P18858 RNU6-562P-201ENST00000362731 107 ntBASIC5.19□□□□□ -1.58
LIG1P18858 Y_RNA.80-201ENST00000362996 102 ntBASIC5.19□□□□□ -1.58
LIG1P18858 RNVU1-3-201ENST00000364313 161 ntBASIC5.19□□□□□ -1.58
LIG1P18858 RNU1-63P-201ENST00000383902 164 ntBASIC5.19□□□□□ -1.58
LIG1P18858 RNU6-890P-201ENST00000384121 107 ntBASIC5.19□□□□□ -1.58
LIG1P18858 Y_RNA.476-201ENST00000384347 108 ntBASIC5.19□□□□□ -1.58
LIG1P18858 Y_RNA.527-201ENST00000384573 102 ntBASIC5.19□□□□□ -1.58
LIG1P18858 AL109755.1-201ENST00000401791 649 ntBASIC5.19□□□□□ -1.58
LIG1P18858 RNU4-6P-201ENST00000410804 122 ntBASIC5.19□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 94.8 ms