Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.56□□□□□ -2
CLDN9O95484 DDX10P1-201ENST00000448545 1933 ntBASIC2.56□□□□□ -2
CLDN9O95484 AC008669.1-201ENST00000565823 2178 ntBASIC2.56□□□□□ -2
CLDN9O95484 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.55□□□□□ -2
CLDN9O95484 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
CLDN9O95484 RNU6-777P-201ENST00000364265 104 ntBASIC2.55□□□□□ -2
CLDN9O95484 SNORD56.5-201ENST00000364281 72 ntBASIC2.55□□□□□ -2
CLDN9O95484 RNU1-100P-201ENST00000365255 165 ntBASIC2.55□□□□□ -2
CLDN9O95484 RNA5SP210-201ENST00000391034 120 ntBASIC2.55□□□□□ -2
CLDN9O95484 RAP1BP1-201ENST00000412709 553 ntBASIC2.55□□□□□ -2
CLDN9O95484 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC2.55□□□□□ -2
CLDN9O95484 TRBV24OR9-2-201ENST00000416632 435 ntBASIC2.55□□□□□ -2
CLDN9O95484 MTCYBP38-201ENST00000417160 1123 ntBASIC2.55□□□□□ -2
CLDN9O95484 AL365496.1-201ENST00000426885 215 ntBASIC2.55□□□□□ -2
CLDN9O95484 BNIP3P2-201ENST00000441221 577 ntBASIC2.55□□□□□ -2
CLDN9O95484 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC2.55□□□□□ -2
CLDN9O95484 PAXBP1P1-201ENST00000449315 447 ntBASIC2.55□□□□□ -2
CLDN9O95484 MTND1P9-201ENST00000453775 944 ntBASIC2.55□□□□□ -2
CLDN9O95484 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC2.55□□□□□ -2
CLDN9O95484 ATG12P2-201ENST00000456830 416 ntBASIC2.55□□□□□ -2
CLDN9O95484 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC2.55□□□□□ -2
CLDN9O95484 AC100870.1-201ENST00000522035 505 ntBASIC2.55□□□□□ -2
CLDN9O95484 AC079600.2-201ENST00000550076 130 ntBASIC2.55□□□□□ -2
CLDN9O95484 TRAV28-201ENST00000557548 323 ntBASIC2.55□□□□□ -2
CLDN9O95484 AC099786.3-201ENST00000565735 1410 ntBASIC2.55□□□□□ -2
CLDN9O95484 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC2.55□□□□□ -2
CLDN9O95484 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC2.55□□□□□ -2
CLDN9O95484 AL160237.3-201ENST00000604114 1013 ntBASIC2.55□□□□□ -2
CLDN9O95484 AC090186.1-201ENST00000605991 572 ntBASIC2.55□□□□□ -2
CLDN9O95484 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC2.55□□□□□ -2
CLDN9O95484 UBE2Q2P6-201ENST00000612666 153 ntBASIC2.55□□□□□ -2
CLDN9O95484 AC013476.2-201ENST00000614456 459 ntBASIC2.55□□□□□ -2
CLDN9O95484 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC2.55□□□□□ -2
CLDN9O95484 AC009269.6-201ENST00000621778 588 ntBASIC2.55□□□□□ -2
CLDN9O95484 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC2.55□□□□□ -2
CLDN9O95484 AL138713.1-201ENST00000624026 2130 ntBASIC2.55□□□□□ -2
CLDN9O95484 AC019226.1-201ENST00000625666 515 ntBASIC2.55□□□□□ -2
CLDN9O95484 AC099063.3-201ENST00000642066 185 ntBASIC2.55□□□□□ -2
CLDN9O95484 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
CLDN9O95484 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
CLDN9O95484 AC092447.10-201ENST00000620607 1652 ntBASIC2.54□□□□□ -2
CLDN9O95484 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC2.54□□□□□ -2
CLDN9O95484 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
CLDN9O95484 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.54□□□□□ -2
CLDN9O95484 ZBTB8OSP1-201ENST00000342688 498 ntBASIC2.54□□□□□ -2
CLDN9O95484 RNU4-68P-201ENST00000364314 141 ntBASIC2.54□□□□□ -2
CLDN9O95484 FO393413.1-201ENST00000402892 195 ntBASIC2.54□□□□□ -2
CLDN9O95484 RNU6-193P-201ENST00000410977 107 ntBASIC2.54□□□□□ -2
CLDN9O95484 OOSP1P1-201ENST00000423265 274 ntBASIC2.54□□□□□ -2
CLDN9O95484 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC2.54□□□□□ -2
CLDN9O95484 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.54□□□□□ -2
CLDN9O95484 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC2.54□□□□□ -2
CLDN9O95484 COX7BP2-201ENST00000437976 242 ntBASIC2.54□□□□□ -2
CLDN9O95484 AL049734.2-201ENST00000441066 616 ntBASIC2.54□□□□□ -2
CLDN9O95484 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC2.54□□□□□ -2
CLDN9O95484 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC2.54□□□□□ -2
CLDN9O95484 AL031313.1-201ENST00000448435 256 ntBASIC2.54□□□□□ -2
CLDN9O95484 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC2.54□□□□□ -2
CLDN9O95484 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.54□□□□□ -2
CLDN9O95484 RNU7-23P-201ENST00000459465 62 ntBASIC2.54□□□□□ -2
CLDN9O95484 SRIP1-201ENST00000489235 288 ntBASIC2.54□□□□□ -2
CLDN9O95484 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC2.54□□□□□ -2
CLDN9O95484 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC2.54□□□□□ -2
CLDN9O95484 RNA5SP291-201ENST00000517222 105 ntBASIC2.54□□□□□ -2
CLDN9O95484 HMGN1P28-201ENST00000521340 364 ntBASIC2.54□□□□□ -2
CLDN9O95484 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC2.54□□□□□ -2
CLDN9O95484 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC2.54□□□□□ -2
CLDN9O95484 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC2.54□□□□□ -2
CLDN9O95484 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
CLDN9O95484 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC2.54□□□□□ -2
CLDN9O95484 AC010546.1-201ENST00000569391 485 ntBASIC2.54□□□□□ -2
CLDN9O95484 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.54□□□□□ -2
CLDN9O95484 TPMTP1-201ENST00000592307 737 ntBASIC2.54□□□□□ -2
CLDN9O95484 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC2.54□□□□□ -2
CLDN9O95484 AC006023.1-201ENST00000603944 259 ntBASIC2.54□□□□□ -2
CLDN9O95484 AL139344.1-201ENST00000605228 195 ntBASIC2.54□□□□□ -2
CLDN9O95484 AL157392.4-201ENST00000609756 345 ntBASIC2.54□□□□□ -2
CLDN9O95484 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
CLDN9O95484 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC2.54□□□□□ -2
CLDN9O95484 AC099654.9-201ENST00000637055 678 ntBASIC2.54□□□□□ -2
CLDN9O95484 AL445984.1-201ENST00000637834 659 ntBASIC2.54□□□□□ -2
CLDN9O95484 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.53□□□□□ -2
CLDN9O95484 RNU1-109P-201ENST00000383960 147 ntBASIC2.53□□□□□ -2
CLDN9O95484 AL139095.1-201ENST00000404326 391 ntBASIC2.53□□□□□ -2
CLDN9O95484 HMGN2P35-201ENST00000412164 270 ntBASIC2.53□□□□□ -2
CLDN9O95484 AC011816.1-201ENST00000441346 546 ntBASIC2.53□□□□□ -2
CLDN9O95484 MTCYBP3-201ENST00000445588 1137 ntBASIC2.53□□□□□ -2
CLDN9O95484 WASF1P1-201ENST00000447560 1131 ntBASIC2.53□□□□□ -2
CLDN9O95484 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC2.53□□□□□ -2
CLDN9O95484 AP1S2P1-201ENST00000457344 379 ntBASIC2.53□□□□□ -2
CLDN9O95484 AC087588.1-201ENST00000462203 316 ntBASIC2.53□□□□□ -2
CLDN9O95484 AC126182.1-201ENST00000478134 357 ntBASIC2.53□□□□□ -2
CLDN9O95484 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC2.53□□□□□ -2
CLDN9O95484 AC138853.1-201ENST00000503549 823 ntBASIC2.53□□□□□ -2
CLDN9O95484 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC2.53□□□□□ -2
CLDN9O95484 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC2.53□□□□□ -2
CLDN9O95484 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.53□□□□□ -2
CLDN9O95484 RN7SKP132-201ENST00000516001 208 ntBASIC2.53□□□□□ -2
CLDN9O95484 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC2.53□□□□□ -2
CLDN9O95484 ZDHHC20P3-201ENST00000531576 336 ntBASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 83.4 ms