Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.59□□□□□ -1.83
SNX9Q9Y5X1 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.59□□□□□ -1.83
SNX9Q9Y5X1 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC3.59□□□□□ -1.83
SNX9Q9Y5X1 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC3.59□□□□□ -1.83
SNX9Q9Y5X1 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.59□□□□□ -1.83
SNX9Q9Y5X1 CKS1BP3-201ENST00000600888 237 ntBASIC3.59□□□□□ -1.83
SNX9Q9Y5X1 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC3.59□□□□□ -1.83
SNX9Q9Y5X1 AL355472.4-201ENST00000610233 626 ntBASIC3.59□□□□□ -1.83
SNX9Q9Y5X1 UBE2Q2P2-203ENST00000613592 761 ntBASIC3.59□□□□□ -1.83
SNX9Q9Y5X1 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.59□□□□□ -1.83
SNX9Q9Y5X1 AC009159.1-201ENST00000618386 642 ntBASIC3.59□□□□□ -1.83
SNX9Q9Y5X1 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.83
SNX9Q9Y5X1 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
SNX9Q9Y5X1 MTND5P1-201ENST00000445440 1375 ntBASIC3.59□□□□□ -1.83
SNX9Q9Y5X1 Z83843.1-201ENST00000604070 3685 ntBASIC3.59□□□□□ -1.84
SNX9Q9Y5X1 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
SNX9Q9Y5X1 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.58□□□□□ -1.84
SNX9Q9Y5X1 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.58□□□□□ -1.84
SNX9Q9Y5X1 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
SNX9Q9Y5X1 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.58□□□□□ -1.84
SNX9Q9Y5X1 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
SNX9Q9Y5X1 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
SNX9Q9Y5X1 FRG1BP-201ENST00000278882 761 ntBASIC3.58□□□□□ -1.84
SNX9Q9Y5X1 RNA5SP387-201ENST00000364226 106 ntBASIC3.58□□□□□ -1.84
SNX9Q9Y5X1 AL359704.1-201ENST00000411586 781 ntBASIC3.58□□□□□ -1.84
SNX9Q9Y5X1 RAD23BP2-201ENST00000416003 1207 ntBASIC3.58□□□□□ -1.84
SNX9Q9Y5X1 AL353777.1-201ENST00000425552 326 ntBASIC3.58□□□□□ -1.84
SNX9Q9Y5X1 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.58□□□□□ -1.84
SNX9Q9Y5X1 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC3.58□□□□□ -1.84
SNX9Q9Y5X1 AL049734.2-201ENST00000441066 616 ntBASIC3.58□□□□□ -1.84
SNX9Q9Y5X1 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC3.58□□□□□ -1.84
SNX9Q9Y5X1 SNORD121B-201ENST00000458838 81 ntBASIC3.58□□□□□ -1.84
SNX9Q9Y5X1 MTND1P3-201ENST00000484956 952 ntBASIC3.58□□□□□ -1.84
SNX9Q9Y5X1 PCBP2P3-201ENST00000509726 843 ntBASIC3.58□□□□□ -1.84
SNX9Q9Y5X1 RNU6-430P-201ENST00000517078 107 ntBASIC3.58□□□□□ -1.84
SNX9Q9Y5X1 MTCO2P4-201ENST00000517968 247 ntBASIC3.58□□□□□ -1.84
SNX9Q9Y5X1 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC3.58□□□□□ -1.84
SNX9Q9Y5X1 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.58□□□□□ -1.84
SNX9Q9Y5X1 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
SNX9Q9Y5X1 AC123904.2-201ENST00000548059 300 ntBASIC3.58□□□□□ -1.84
SNX9Q9Y5X1 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC3.58□□□□□ -1.84
SNX9Q9Y5X1 AC137800.2-201ENST00000574375 120 ntBASIC3.58□□□□□ -1.84
SNX9Q9Y5X1 MIR3118-1-201ENST00000581787 76 ntBASIC3.58□□□□□ -1.84
SNX9Q9Y5X1 AC096577.2-201ENST00000611455 153 ntBASIC3.58□□□□□ -1.84
SNX9Q9Y5X1 AC006329.2-201ENST00000611491 394 ntBASIC3.58□□□□□ -1.84
SNX9Q9Y5X1 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.58□□□□□ -1.84
SNX9Q9Y5X1 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
SNX9Q9Y5X1 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 SRP72P2-201ENST00000344851 1979 ntBASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 DEFB109C-201ENST00000382575 264 ntBASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 DEFB109B-201ENST00000382656 264 ntBASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 AC007256.1-201ENST00000392253 2765 ntBASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 CCNG1P1-201ENST00000406783 885 ntBASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 RNA5SP120-201ENST00000410900 112 ntBASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 HMGN1P24-201ENST00000412282 298 ntBASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 FCF1P9-201ENST00000412546 282 ntBASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 AL356968.1-201ENST00000416622 474 ntBASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 C1DP2-201ENST00000418167 426 ntBASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 FARSBP1-201ENST00000435808 1778 ntBASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 AC006539.3-201ENST00000454258 129 ntBASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 RPS4XP2-201ENST00000458402 793 ntBASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 snoU13.8-201ENST00000458890 104 ntBASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 snoU109.4-201ENST00000458953 143 ntBASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 AC092185.1-201ENST00000491371 97 ntBASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 AC020893.1-201ENST00000502452 580 ntBASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 AC114967.1-201ENST00000504890 259 ntBASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 AC022616.6-201ENST00000520479 119 ntBASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 SETP7-201ENST00000552169 453 ntBASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 AC092125.1-201ENST00000562568 1995 ntBASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 TPRKBP2-201ENST00000565969 475 ntBASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 AC015917.1-201ENST00000579654 510 ntBASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 AL359999.1-201ENST00000604513 294 ntBASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 AC103710.1-201ENST00000610003 901 ntBASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 AC136475.10-201ENST00000620253 385 ntBASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 AL356321.1-201ENST00000621360 228 ntBASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 AC079597.1-201ENST00000624306 508 ntBASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 PISRT1-201ENST00000626175 531 ntBASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.57□□□□□ -1.84
SNX9Q9Y5X1 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 90.7 ms