Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 AC066616.2-201ENST00000559334 1481 ntBASIC5.51□□□□□ -1.53
CCDC9Q9Y3X0 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC5.51□□□□□ -1.53
CCDC9Q9Y3X0 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC5.51□□□□□ -1.53
CCDC9Q9Y3X0 AL049641.1-201ENST00000441055 1948 ntBASIC5.51□□□□□ -1.53
CCDC9Q9Y3X0 AC011266.1-201ENST00000624119 3569 ntBASIC5.51□□□□□ -1.53
CCDC9Q9Y3X0 RNA5SP52-201ENST00000362448 134 ntBASIC5.51□□□□□ -1.53
CCDC9Q9Y3X0 Y_RNA.245-201ENST00000364493 95 ntBASIC5.51□□□□□ -1.53
CCDC9Q9Y3X0 RNU4-12P-201ENST00000365233 139 ntBASIC5.51□□□□□ -1.53
CCDC9Q9Y3X0 SNORA1.3-201ENST00000384676 136 ntBASIC5.51□□□□□ -1.53
CCDC9Q9Y3X0 U8.11-201ENST00000384699 133 ntBASIC5.51□□□□□ -1.53
CCDC9Q9Y3X0 U8.12-201ENST00000384701 133 ntBASIC5.51□□□□□ -1.53
CCDC9Q9Y3X0 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC5.51□□□□□ -1.53
CCDC9Q9Y3X0 RPS12P24-201ENST00000412619 387 ntBASIC5.51□□□□□ -1.53
CCDC9Q9Y3X0 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC5.51□□□□□ -1.53
CCDC9Q9Y3X0 RPL36AP10-201ENST00000421785 322 ntBASIC5.51□□□□□ -1.53
CCDC9Q9Y3X0 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC5.51□□□□□ -1.53
CCDC9Q9Y3X0 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC5.51□□□□□ -1.53
CCDC9Q9Y3X0 TBCAP1-201ENST00000436520 327 ntBASIC5.51□□□□□ -1.53
CCDC9Q9Y3X0 RPS4XP4-201ENST00000443195 763 ntBASIC5.51□□□□□ -1.53
CCDC9Q9Y3X0 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC5.51□□□□□ -1.53
CCDC9Q9Y3X0 U8.18-201ENST00000459285 133 ntBASIC5.51□□□□□ -1.53
CCDC9Q9Y3X0 AC084357.1-201ENST00000473404 255 ntBASIC5.51□□□□□ -1.53
CCDC9Q9Y3X0 UBE2CP3-201ENST00000502715 450 ntBASIC5.51□□□□□ -1.53
CCDC9Q9Y3X0 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC5.51□□□□□ -1.53
CCDC9Q9Y3X0 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC5.51□□□□□ -1.53
CCDC9Q9Y3X0 Y_RNA.689-201ENST00000516589 107 ntBASIC5.51□□□□□ -1.53
CCDC9Q9Y3X0 Y_RNA.693-201ENST00000516641 110 ntBASIC5.51□□□□□ -1.53
CCDC9Q9Y3X0 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC5.51□□□□□ -1.53
CCDC9Q9Y3X0 NACA-211ENST00000548563 827 ntTSL 5 BASIC5.51□□□□□ -1.53
CCDC9Q9Y3X0 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC5.51□□□□□ -1.53
CCDC9Q9Y3X0 AC107016.1-201ENST00000550463 337 ntBASIC5.51□□□□□ -1.53
CCDC9Q9Y3X0 AC005000.2-201ENST00000605468 310 ntBASIC5.51□□□□□ -1.53
CCDC9Q9Y3X0 AC130324.3-201ENST00000614165 542 ntBASIC5.51□□□□□ -1.53
CCDC9Q9Y3X0 AC019278.1-201ENST00000623516 479 ntBASIC5.51□□□□□ -1.53
CCDC9Q9Y3X0 AC007546.2-201ENST00000623996 360 ntBASIC5.51□□□□□ -1.53
CCDC9Q9Y3X0 MAPK10-372ENST00000641954 3413 ntBASIC5.51□□□□□ -1.53
CCDC9Q9Y3X0 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
CCDC9Q9Y3X0 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC5.51□□□□□ -1.53
CCDC9Q9Y3X0 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC5.51□□□□□ -1.53
CCDC9Q9Y3X0 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC9Q9Y3X0 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC9Q9Y3X0 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
CCDC9Q9Y3X0 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC9Q9Y3X0 ELF2P3-201ENST00000445099 1506 ntBASIC5.5□□□□□ -1.53
CCDC9Q9Y3X0 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC9Q9Y3X0 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC9Q9Y3X0 Y_RNA.554-201ENST00000384672 102 ntBASIC5.5□□□□□ -1.53
CCDC9Q9Y3X0 RNVU1-14-201ENST00000384770 164 ntBASIC5.5□□□□□ -1.53
CCDC9Q9Y3X0 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC9Q9Y3X0 RPL21P17-201ENST00000397467 475 ntBASIC5.5□□□□□ -1.53
CCDC9Q9Y3X0 MIR548F1-201ENST00000408667 84 ntBASIC5.5□□□□□ -1.53
CCDC9Q9Y3X0 MIR1183-201ENST00000408856 89 ntBASIC5.5□□□□□ -1.53
CCDC9Q9Y3X0 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC5.5□□□□□ -1.53
CCDC9Q9Y3X0 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC5.5□□□□□ -1.53
CCDC9Q9Y3X0 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC9Q9Y3X0 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC5.5□□□□□ -1.53
CCDC9Q9Y3X0 MTATP6P13-201ENST00000438531 667 ntBASIC5.5□□□□□ -1.53
CCDC9Q9Y3X0 AL451050.1-201ENST00000450126 415 ntBASIC5.5□□□□□ -1.53
CCDC9Q9Y3X0 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC9Q9Y3X0 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC9Q9Y3X0 RPL39P36-201ENST00000490784 156 ntBASIC5.5□□□□□ -1.53
CCDC9Q9Y3X0 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC5.5□□□□□ -1.53
CCDC9Q9Y3X0 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC9Q9Y3X0 RNU6-143P-201ENST00000516942 93 ntBASIC5.5□□□□□ -1.53
CCDC9Q9Y3X0 RNA5SP471-201ENST00000516971 106 ntBASIC5.5□□□□□ -1.53
CCDC9Q9Y3X0 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC9Q9Y3X0 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC9Q9Y3X0 AC007621.1-201ENST00000604544 437 ntBASIC5.5□□□□□ -1.53
CCDC9Q9Y3X0 U3.45-201ENST00000607547 219 ntBASIC5.5□□□□□ -1.53
CCDC9Q9Y3X0 AC022893.3-201ENST00000607665 437 ntBASIC5.5□□□□□ -1.53
CCDC9Q9Y3X0 AP001596.2-201ENST00000608410 312 ntBASIC5.5□□□□□ -1.53
CCDC9Q9Y3X0 MIR7151-201ENST00000617477 60 ntBASIC5.5□□□□□ -1.53
CCDC9Q9Y3X0 MIR6076-201ENST00000617521 113 ntBASIC5.5□□□□□ -1.53
CCDC9Q9Y3X0 VPS8-228ENST00000628962 207 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC9Q9Y3X0 U6.105-201ENST00000637379 88 ntBASIC5.5□□□□□ -1.53
CCDC9Q9Y3X0 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC5.5□□□□□ -1.53
CCDC9Q9Y3X0 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC9Q9Y3X0 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC5.5□□□□□ -1.53
CCDC9Q9Y3X0 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
CCDC9Q9Y3X0 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC9Q9Y3X0 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC5.5□□□□□ -1.53
CCDC9Q9Y3X0 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 AP001148.1-201ENST00000624124 2359 ntBASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 RNU6-512P-201ENST00000364438 103 ntBASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 SNORD6-201ENST00000365444 73 ntBASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 AL591416.1-201ENST00000404015 867 ntBASIC5.49□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms