Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 RNU4-48P-201ENST00000365559 182 ntBASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 RNU6-39P-201ENST00000384344 107 ntBASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 MIR1-2-201ENST00000384961 85 ntBASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 RNU6-882P-201ENST00000391025 103 ntBASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 PPIAP31-201ENST00000405422 495 ntBASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 OR51A5P-201ENST00000415429 942 ntBASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 AL139413.1-201ENST00000421309 217 ntBASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 RSL24D1P6-201ENST00000426934 401 ntBASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 AC090774.1-201ENST00000435925 246 ntBASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 HMGB1P31-201ENST00000437242 427 ntBASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 MTCO3P45-201ENST00000443036 613 ntBASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 RNU6-420P-201ENST00000458780 107 ntBASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 HSPD1P15-201ENST00000505573 1122 ntBASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 AC020593.1-201ENST00000507399 299 ntBASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 IL7R-208ENST00000511982 612 ntTSL 2 BASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 HMGB1P41-201ENST00000520234 440 ntBASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 AP004371.1-201ENST00000525240 214 ntBASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 AC123904.3-201ENST00000547218 814 ntBASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 AC053481.4-201ENST00000583164 216 ntBASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 AC005344.1-201ENST00000613391 459 ntBASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 AL450472.3-201ENST00000615578 367 ntBASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 AC007656.2-201ENST00000624902 4547 ntBASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 HSPA8P1-201ENST00000425843 1833 ntBASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC4.29□□□□□ -1.72
LIMCH1Q9UPQ0 RNU6-867P-201ENST00000364956 107 ntBASIC4.29□□□□□ -1.72
LIMCH1Q9UPQ0 RNU5E-6P-201ENST00000365574 115 ntBASIC4.29□□□□□ -1.72
LIMCH1Q9UPQ0 RNU6-1074P-201ENST00000383995 104 ntBASIC4.29□□□□□ -1.72
LIMCH1Q9UPQ0 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
LIMCH1Q9UPQ0 MIR1183-201ENST00000408856 89 ntBASIC4.29□□□□□ -1.72
LIMCH1Q9UPQ0 RNU6-908P-201ENST00000410160 94 ntBASIC4.29□□□□□ -1.72
LIMCH1Q9UPQ0 RNU2-9P-201ENST00000410194 145 ntBASIC4.29□□□□□ -1.72
LIMCH1Q9UPQ0 RNU2-39P-201ENST00000410604 198 ntBASIC4.29□□□□□ -1.72
LIMCH1Q9UPQ0 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC4.29□□□□□ -1.72
LIMCH1Q9UPQ0 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC4.29□□□□□ -1.72
LIMCH1Q9UPQ0 USP12PX-201ENST00000432383 1057 ntBASIC4.29□□□□□ -1.72
LIMCH1Q9UPQ0 AL606489.2-201ENST00000433886 234 ntBASIC4.29□□□□□ -1.72
LIMCH1Q9UPQ0 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
LIMCH1Q9UPQ0 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC4.29□□□□□ -1.72
LIMCH1Q9UPQ0 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC4.29□□□□□ -1.72
LIMCH1Q9UPQ0 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC4.29□□□□□ -1.72
LIMCH1Q9UPQ0 MTND3P10-201ENST00000450967 341 ntBASIC4.29□□□□□ -1.72
LIMCH1Q9UPQ0 SNRPGP6-201ENST00000451124 220 ntBASIC4.29□□□□□ -1.72
LIMCH1Q9UPQ0 AC008481.1-201ENST00000463278 396 ntBASIC4.29□□□□□ -1.72
LIMCH1Q9UPQ0 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
LIMCH1Q9UPQ0 AC105417.1-201ENST00000514691 285 ntBASIC4.29□□□□□ -1.72
LIMCH1Q9UPQ0 SNORA40.12-201ENST00000516329 111 ntBASIC4.29□□□□□ -1.72
LIMCH1Q9UPQ0 RNU6-358P-201ENST00000516564 75 ntBASIC4.29□□□□□ -1.72
LIMCH1Q9UPQ0 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC4.29□□□□□ -1.72
LIMCH1Q9UPQ0 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC4.29□□□□□ -1.72
LIMCH1Q9UPQ0 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC4.29□□□□□ -1.72
LIMCH1Q9UPQ0 BNIP3P5-201ENST00000562290 498 ntBASIC4.29□□□□□ -1.72
LIMCH1Q9UPQ0 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC4.29□□□□□ -1.72
LIMCH1Q9UPQ0 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC4.29□□□□□ -1.72
LIMCH1Q9UPQ0 AC130324.3-201ENST00000614165 542 ntBASIC4.29□□□□□ -1.72
LIMCH1Q9UPQ0 AC022306.2-201ENST00000617563 647 ntBASIC4.29□□□□□ -1.72
LIMCH1Q9UPQ0 ZYXP1-201ENST00000617638 118 ntBASIC4.29□□□□□ -1.72
LIMCH1Q9UPQ0 DUXAP9-208ENST00000622815 614 ntBASIC4.29□□□□□ -1.72
LIMCH1Q9UPQ0 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC4.29□□□□□ -1.72
LIMCH1Q9UPQ0 TEX41-280ENST00000629185 591 ntTSL 5 BASIC4.29□□□□□ -1.72
LIMCH1Q9UPQ0 AP004289.2-201ENST00000444413 1457 ntBASIC4.29□□□□□ -1.72
LIMCH1Q9UPQ0 EXOC5P1-201ENST00000510543 1969 ntBASIC4.29□□□□□ -1.72
LIMCH1Q9UPQ0 MTND5P17-201ENST00000418405 1603 ntBASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 GABPAP-201ENST00000419271 1356 ntBASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 TAB3P1-202ENST00000452645 1634 ntBASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 AL137003.2-201ENST00000606924 2538 ntBASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 AC007685.1-201ENST00000329806 452 ntBASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 Y_RNA.22-201ENST00000362492 102 ntBASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 RNU6-960P-201ENST00000364056 120 ntBASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 MIR454-201ENST00000390180 115 ntBASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 RNU6-1158P-201ENST00000391167 107 ntBASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 RAB28P1-201ENST00000411517 641 ntBASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 EI24P1-201ENST00000416584 867 ntBASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 PPP1R11P2-201ENST00000423543 382 ntBASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 AC016691.1-201ENST00000441321 413 ntBASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 ANP32BP2-201ENST00000454525 545 ntBASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms