Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 AC008568.2-201ENST00000623862 2313 ntBASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 AC012321.1-201ENST00000561622 1588 ntBASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 ZNF833P-201ENST00000424938 1494 ntBASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 AL445523.1-201ENST00000451184 1362 ntBASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 RNU5F-6P-201ENST00000362979 116 ntBASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 SNORD116-8-201ENST00000384365 95 ntBASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 MIR483-201ENST00000385070 76 ntBASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 RPL37P21-201ENST00000435890 276 ntBASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 FTH1P1-201ENST00000437933 532 ntBASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 TRIM60P18-201ENST00000441518 828 ntBASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 KATNBL1P6-201ENST00000453433 915 ntBASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 AP1S2P1-201ENST00000457344 379 ntBASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 MTCO1P42-201ENST00000457379 726 ntBASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 RN7SL20P-201ENST00000488827 297 ntBASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 AL359273.1-201ENST00000510918 627 ntBASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 MTND2P38-201ENST00000522536 667 ntBASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 SETP2-201ENST00000553886 926 ntBASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 ROCK1P1-201ENST00000573767 549 ntBASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 AL357094.1-201ENST00000603845 844 ntBASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 AC107294.3-201ENST00000609211 526 ntBASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 AL603758.1-201ENST00000618654 241 ntBASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 AC009268.2-201ENST00000621925 457 ntBASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 AC233263.6-201ENST00000631132 1963 ntBASIC3.31□□□□□ -1.88
CPSF3Q9UKF6 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 AC092435.3-201ENST00000565538 3654 ntBASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 ANKRD20A17P-201ENST00000511745 1330 ntBASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 SNORA71.1-201ENST00000364523 117 ntBASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 MIR128-1-201ENST00000384921 82 ntBASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 AL138885.1-201ENST00000405921 675 ntBASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 CCNG1P1-201ENST00000406783 885 ntBASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 AC078974.1-201ENST00000411597 223 ntBASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 RPL7P8-201ENST00000411964 730 ntBASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 Z99497.1-201ENST00000421282 135 ntBASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 MTND3P7-201ENST00000474435 343 ntBASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 BET1P1-201ENST00000482276 359 ntBASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 AC109486.1-201ENST00000486833 374 ntBASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 KCTD9P5-201ENST00000504141 1170 ntBASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 AC116347.2-201ENST00000514912 523 ntBASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 AC106038.2-201ENST00000520706 568 ntBASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 AP002404.1-201ENST00000532005 451 ntBASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 AC105224.1-201ENST00000587055 421 ntBASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 AL022161.1-201ENST00000604390 213 ntBASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 AC005000.2-201ENST00000605468 310 ntBASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 AL162274.2-201ENST00000614406 332 ntBASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 AC078883.4-201ENST00000623218 367 ntBASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.3□□□□□ -1.88
CPSF3Q9UKF6 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
CPSF3Q9UKF6 RNU6-809P-201ENST00000384461 107 ntBASIC3.29□□□□□ -1.88
CPSF3Q9UKF6 RNU6-516P-201ENST00000411381 104 ntBASIC3.29□□□□□ -1.88
CPSF3Q9UKF6 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.29□□□□□ -1.88
CPSF3Q9UKF6 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 208.6 ms