Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AC131280.1-202ENST00000624067 4211 ntBASIC1.61□□□□□ -2.15
SCN3AQ9NY46 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
SCN3AQ9NY46 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC1.6□□□□□ -2.15
SCN3AQ9NY46 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC1.6□□□□□ -2.15
SCN3AQ9NY46 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC1.6□□□□□ -2.15
SCN3AQ9NY46 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC1.6□□□□□ -2.15
SCN3AQ9NY46 AC090096.1-201ENST00000489168 390 ntBASIC1.6□□□□□ -2.15
SCN3AQ9NY46 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC1.6□□□□□ -2.15
SCN3AQ9NY46 AC093281.2-201ENST00000510153 597 ntBASIC1.6□□□□□ -2.15
SCN3AQ9NY46 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
SCN3AQ9NY46 RNU6-250P-201ENST00000516958 103 ntBASIC1.6□□□□□ -2.15
SCN3AQ9NY46 AC015712.3-201ENST00000559380 164 ntBASIC1.6□□□□□ -2.15
SCN3AQ9NY46 MIR4303-201ENST00000581299 66 ntBASIC1.6□□□□□ -2.15
SCN3AQ9NY46 AP001004.1-201ENST00000582468 324 ntBASIC1.6□□□□□ -2.15
SCN3AQ9NY46 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC1.6□□□□□ -2.15
SCN3AQ9NY46 AC025588.3-201ENST00000604182 274 ntBASIC1.6□□□□□ -2.15
SCN3AQ9NY46 AC013468.1-201ENST00000608680 598 ntBASIC1.6□□□□□ -2.15
SCN3AQ9NY46 AC025594.3-201ENST00000613068 790 ntBASIC1.6□□□□□ -2.15
SCN3AQ9NY46 AC140725.3-201ENST00000616193 880 ntBASIC1.6□□□□□ -2.15
SCN3AQ9NY46 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC1.6□□□□□ -2.15
SCN3AQ9NY46 AC009318.4-201ENST00000620496 486 ntBASIC1.6□□□□□ -2.15
SCN3AQ9NY46 U6.107-201ENST00000637108 79 ntBASIC1.6□□□□□ -2.15
SCN3AQ9NY46 BX649567.1-201ENST00000642071 1134 ntBASIC1.6□□□□□ -2.15
SCN3AQ9NY46 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC1.6□□□□□ -2.15
SCN3AQ9NY46 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.6□□□□□ -2.15
SCN3AQ9NY46 RNU4ATAC16P-201ENST00000408512 126 ntBASIC1.59□□□□□ -2.15
SCN3AQ9NY46 RNU4-62P-201ENST00000410125 130 ntBASIC1.59□□□□□ -2.15
SCN3AQ9NY46 TPT1P14-201ENST00000448018 505 ntBASIC1.59□□□□□ -2.15
SCN3AQ9NY46 AC104073.1-201ENST00000451988 151 ntBASIC1.59□□□□□ -2.15
SCN3AQ9NY46 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC1.59□□□□□ -2.15
SCN3AQ9NY46 RPS27P23-201ENST00000487608 251 ntBASIC1.59□□□□□ -2.15
SCN3AQ9NY46 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC1.59□□□□□ -2.15
SCN3AQ9NY46 RNA5SP182-201ENST00000516064 82 ntBASIC1.59□□□□□ -2.15
SCN3AQ9NY46 RNU4ATAC10P-201ENST00000516967 122 ntBASIC1.59□□□□□ -2.15
SCN3AQ9NY46 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC1.59□□□□□ -2.15
SCN3AQ9NY46 MIR3618-201ENST00000580330 88 ntBASIC1.59□□□□□ -2.15
SCN3AQ9NY46 AC010928.2-201ENST00000588017 287 ntBASIC1.59□□□□□ -2.15
SCN3AQ9NY46 RPS15AP11-201ENST00000594193 385 ntBASIC1.59□□□□□ -2.15
SCN3AQ9NY46 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC1.59□□□□□ -2.15
SCN3AQ9NY46 SUMO2P14-201ENST00000604488 293 ntBASIC1.59□□□□□ -2.15
SCN3AQ9NY46 BX322635.1-201ENST00000605804 496 ntBASIC1.59□□□□□ -2.15
SCN3AQ9NY46 MIR502-201ENST00000606349 86 ntBASIC1.59□□□□□ -2.15
SCN3AQ9NY46 MIR203B-201ENST00000636080 86 ntBASIC1.59□□□□□ -2.15
SCN3AQ9NY46 SEC63P2-201ENST00000503863 1939 ntBASIC1.59□□□□□ -2.16
SCN3AQ9NY46 RNU6-482P-201ENST00000391068 107 ntBASIC1.59□□□□□ -2.16
SCN3AQ9NY46 AL627390.1-201ENST00000396055 340 ntBASIC1.59□□□□□ -2.16
SCN3AQ9NY46 RNU6-1140P-201ENST00000410517 106 ntBASIC1.59□□□□□ -2.16
SCN3AQ9NY46 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC1.59□□□□□ -2.16
SCN3AQ9NY46 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC1.59□□□□□ -2.16
SCN3AQ9NY46 CABYRP1-201ENST00000465493 1045 ntBASIC1.59□□□□□ -2.16
SCN3AQ9NY46 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC1.59□□□□□ -2.16
SCN3AQ9NY46 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC1.59□□□□□ -2.16
SCN3AQ9NY46 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC1.59□□□□□ -2.16
SCN3AQ9NY46 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC1.59□□□□□ -2.16
SCN3AQ9NY46 AC022634.1-201ENST00000520765 532 ntBASIC1.59□□□□□ -2.16
SCN3AQ9NY46 AC095057.3-201ENST00000567102 1157 ntBASIC1.59□□□□□ -2.16
SCN3AQ9NY46 MIR4658-201ENST00000584344 65 ntBASIC1.59□□□□□ -2.16
SCN3AQ9NY46 NUTF2P8-201ENST00000604593 363 ntBASIC1.59□□□□□ -2.16
SCN3AQ9NY46 AC097504.2-201ENST00000608088 454 ntBASIC1.59□□□□□ -2.16
SCN3AQ9NY46 MIR8081-201ENST00000611533 95 ntBASIC1.59□□□□□ -2.16
SCN3AQ9NY46 MIR6840-201ENST00000611937 71 ntBASIC1.59□□□□□ -2.16
SCN3AQ9NY46 AC010678.1-201ENST00000614118 713 ntBASIC1.59□□□□□ -2.16
SCN3AQ9NY46 MIR8070-201ENST00000616510 88 ntBASIC1.59□□□□□ -2.16
SCN3AQ9NY46 AC090617.9-201ENST00000623751 147 ntBASIC1.59□□□□□ -2.16
SCN3AQ9NY46 AC091953.2-201ENST00000623979 160 ntBASIC1.59□□□□□ -2.16
SCN3AQ9NY46 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC1.59□□□□□ -2.16
SCN3AQ9NY46 AC103710.2-202ENST00000641454 2853 ntBASIC1.58□□□□□ -2.16
SCN3AQ9NY46 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
SCN3AQ9NY46 RNU6-1339P-201ENST00000363574 91 ntBASIC1.58□□□□□ -2.16
SCN3AQ9NY46 RNU6-457P-201ENST00000363999 107 ntBASIC1.58□□□□□ -2.16
SCN3AQ9NY46 RNA5SP99-201ENST00000364020 114 ntBASIC1.58□□□□□ -2.16
SCN3AQ9NY46 SNORA67.1-201ENST00000364749 141 ntBASIC1.58□□□□□ -2.16
SCN3AQ9NY46 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC1.58□□□□□ -2.16
SCN3AQ9NY46 HMGN2P19-201ENST00000425149 265 ntBASIC1.58□□□□□ -2.16
SCN3AQ9NY46 AMD1P1-201ENST00000457220 922 ntBASIC1.58□□□□□ -2.16
SCN3AQ9NY46 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC1.58□□□□□ -2.16
SCN3AQ9NY46 AC104564.1-201ENST00000493028 407 ntBASIC1.58□□□□□ -2.16
SCN3AQ9NY46 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC1.58□□□□□ -2.16
SCN3AQ9NY46 OR8K4P-201ENST00000534608 872 ntBASIC1.58□□□□□ -2.16
SCN3AQ9NY46 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.58□□□□□ -2.16
SCN3AQ9NY46 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC1.58□□□□□ -2.16
SCN3AQ9NY46 DPRXP5-201ENST00000604662 539 ntBASIC1.58□□□□□ -2.16
SCN3AQ9NY46 UCA1.1-201ENST00000620952 75 ntBASIC1.58□□□□□ -2.16
SCN3AQ9NY46 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC1.58□□□□□ -2.16
SCN3AQ9NY46 PISRT1-201ENST00000626175 531 ntBASIC1.58□□□□□ -2.16
SCN3AQ9NY46 ATP8A2P2-201ENST00000437678 1568 ntBASIC1.58□□□□□ -2.16
SCN3AQ9NY46 MTCO1P9-201ENST00000505577 1534 ntBASIC1.58□□□□□ -2.16
SCN3AQ9NY46 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC1.58□□□□□ -2.16
SCN3AQ9NY46 SNORD82-201ENST00000365530 70 ntBASIC1.57□□□□□ -2.16
SCN3AQ9NY46 RNU6-921P-201ENST00000384361 107 ntBASIC1.57□□□□□ -2.16
SCN3AQ9NY46 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC1.57□□□□□ -2.16
SCN3AQ9NY46 AC092047.1-201ENST00000424997 240 ntBASIC1.57□□□□□ -2.16
SCN3AQ9NY46 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC1.57□□□□□ -2.16
SCN3AQ9NY46 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC1.57□□□□□ -2.16
SCN3AQ9NY46 PPP1R2P5-201ENST00000457256 603 ntBASIC1.57□□□□□ -2.16
SCN3AQ9NY46 RPL7P18-201ENST00000478965 734 ntBASIC1.57□□□□□ -2.16
SCN3AQ9NY46 AC079203.1-201ENST00000487972 404 ntBASIC1.57□□□□□ -2.16
SCN3AQ9NY46 AC008427.1-201ENST00000503102 655 ntBASIC1.57□□□□□ -2.16
SCN3AQ9NY46 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC1.57□□□□□ -2.16
SCN3AQ9NY46 RNU6-488P-201ENST00000515918 99 ntBASIC1.57□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms