Protein–RNA interactions for Protein: Q9NXS3

KLHL28, Kelch-like protein 28, humanhuman

Predictions only

Length 571 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KLHL28Q9NXS3 HIGD1AP13-201ENST00000509878 289 ntBASIC2.55□□□□□ -2
KLHL28Q9NXS3 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC2.55□□□□□ -2
KLHL28Q9NXS3 RN7SKP132-201ENST00000516001 208 ntBASIC2.55□□□□□ -2
KLHL28Q9NXS3 RNU6-276P-201ENST00000516114 96 ntBASIC2.55□□□□□ -2
KLHL28Q9NXS3 SNORA19.3-201ENST00000516165 130 ntBASIC2.55□□□□□ -2
KLHL28Q9NXS3 SNORA31.18-201ENST00000517043 134 ntBASIC2.55□□□□□ -2
KLHL28Q9NXS3 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.55□□□□□ -2
KLHL28Q9NXS3 DEFB131D-201ENST00000526803 184 ntBASIC2.55□□□□□ -2
KLHL28Q9NXS3 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC2.55□□□□□ -2
KLHL28Q9NXS3 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.55□□□□□ -2
KLHL28Q9NXS3 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC2.55□□□□□ -2
KLHL28Q9NXS3 AL133271.1-201ENST00000538229 291 ntBASIC2.55□□□□□ -2
KLHL28Q9NXS3 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC2.55□□□□□ -2
KLHL28Q9NXS3 CYCSP39-201ENST00000565821 309 ntBASIC2.55□□□□□ -2
KLHL28Q9NXS3 AL512347.1-201ENST00000566420 503 ntBASIC2.55□□□□□ -2
KLHL28Q9NXS3 RPL23AP84-201ENST00000571193 464 ntBASIC2.55□□□□□ -2
KLHL28Q9NXS3 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC2.55□□□□□ -2
KLHL28Q9NXS3 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
KLHL28Q9NXS3 BNIP3P26-201ENST00000600827 554 ntBASIC2.55□□□□□ -2
KLHL28Q9NXS3 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC2.55□□□□□ -2
KLHL28Q9NXS3 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC2.55□□□□□ -2
KLHL28Q9NXS3 AP003399.1-201ENST00000637534 361 ntBASIC2.55□□□□□ -2
KLHL28Q9NXS3 LINC02211-204ENST00000642024 1070 ntBASIC2.55□□□□□ -2
KLHL28Q9NXS3 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.55□□□□□ -2
KLHL28Q9NXS3 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC2.54□□□□□ -2
KLHL28Q9NXS3 RNU6-97P-201ENST00000363387 104 ntBASIC2.54□□□□□ -2
KLHL28Q9NXS3 RNU6-217P-201ENST00000384164 104 ntBASIC2.54□□□□□ -2
KLHL28Q9NXS3 RNU6-1207P-201ENST00000384343 107 ntBASIC2.54□□□□□ -2
KLHL28Q9NXS3 RNU6-1000P-201ENST00000391066 106 ntBASIC2.54□□□□□ -2
KLHL28Q9NXS3 RPA3-203ENST00000401447 414 ntTSL 3 BASIC2.54□□□□□ -2
KLHL28Q9NXS3 MTND4P13-201ENST00000402078 1023 ntBASIC2.54□□□□□ -2
KLHL28Q9NXS3 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.54□□□□□ -2
KLHL28Q9NXS3 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC2.54□□□□□ -2
KLHL28Q9NXS3 AC087499.2-201ENST00000432861 149 ntBASIC2.54□□□□□ -2
KLHL28Q9NXS3 FGF7P5-201ENST00000441829 291 ntBASIC2.54□□□□□ -2
KLHL28Q9NXS3 PIGFP3-201ENST00000441918 722 ntBASIC2.54□□□□□ -2
KLHL28Q9NXS3 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC2.54□□□□□ -2
KLHL28Q9NXS3 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC2.54□□□□□ -2
KLHL28Q9NXS3 AP1S2P1-201ENST00000457344 379 ntBASIC2.54□□□□□ -2
KLHL28Q9NXS3 RPS20P20-201ENST00000460498 340 ntBASIC2.54□□□□□ -2
KLHL28Q9NXS3 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.54□□□□□ -2
KLHL28Q9NXS3 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC2.54□□□□□ -2
KLHL28Q9NXS3 AC113155.1-201ENST00000511141 769 ntBASIC2.54□□□□□ -2
KLHL28Q9NXS3 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.54□□□□□ -2
KLHL28Q9NXS3 AL355836.1-201ENST00000555951 870 ntBASIC2.54□□□□□ -2
KLHL28Q9NXS3 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
KLHL28Q9NXS3 AC005951.2-201ENST00000576282 495 ntBASIC2.54□□□□□ -2
KLHL28Q9NXS3 MIR4319-201ENST00000577285 85 ntBASIC2.54□□□□□ -2
KLHL28Q9NXS3 MIR4672-201ENST00000583126 81 ntBASIC2.54□□□□□ -2
KLHL28Q9NXS3 AL161729.4-201ENST00000604650 476 ntBASIC2.54□□□□□ -2
KLHL28Q9NXS3 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
KLHL28Q9NXS3 UBE2Q2P2-203ENST00000613592 761 ntBASIC2.54□□□□□ -2
KLHL28Q9NXS3 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC2.54□□□□□ -2
KLHL28Q9NXS3 AL121895.2-201ENST00000619558 447 ntBASIC2.54□□□□□ -2
KLHL28Q9NXS3 CR381653.2-201ENST00000624041 768 ntBASIC2.54□□□□□ -2
KLHL28Q9NXS3 AC106858.1-201ENST00000637497 429 ntBASIC2.54□□□□□ -2
KLHL28Q9NXS3 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
KLHL28Q9NXS3 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.54□□□□□ -2
KLHL28Q9NXS3 RNU6-560P-201ENST00000364007 108 ntBASIC2.53□□□□□ -2
KLHL28Q9NXS3 Y_RNA.472-201ENST00000384322 102 ntBASIC2.53□□□□□ -2
KLHL28Q9NXS3 AL592148.1-201ENST00000413568 445 ntBASIC2.53□□□□□ -2
KLHL28Q9NXS3 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC2.53□□□□□ -2
KLHL28Q9NXS3 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.53□□□□□ -2
KLHL28Q9NXS3 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC2.53□□□□□ -2
KLHL28Q9NXS3 ATG12P2-201ENST00000456830 416 ntBASIC2.53□□□□□ -2
KLHL28Q9NXS3 AC021382.1-201ENST00000483523 359 ntBASIC2.53□□□□□ -2
KLHL28Q9NXS3 AC138853.1-201ENST00000503549 823 ntBASIC2.53□□□□□ -2
KLHL28Q9NXS3 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC2.53□□□□□ -2
KLHL28Q9NXS3 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.53□□□□□ -2
KLHL28Q9NXS3 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC2.53□□□□□ -2
KLHL28Q9NXS3 ATP5F1P5-201ENST00000526403 760 ntBASIC2.53□□□□□ -2
KLHL28Q9NXS3 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC2.53□□□□□ -2
KLHL28Q9NXS3 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC2.53□□□□□ -2
KLHL28Q9NXS3 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.53□□□□□ -2
KLHL28Q9NXS3 CYCSP2-201ENST00000558168 301 ntBASIC2.53□□□□□ -2
KLHL28Q9NXS3 AC021749.1-201ENST00000604322 607 ntBASIC2.53□□□□□ -2
KLHL28Q9NXS3 ATP1B3P1-201ENST00000605365 821 ntBASIC2.53□□□□□ -2
KLHL28Q9NXS3 AP003485.2-201ENST00000623636 610 ntBASIC2.53□□□□□ -2
KLHL28Q9NXS3 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.53□□□□□ -2
KLHL28Q9NXS3 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
KLHL28Q9NXS3 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.53□□□□□ -2
KLHL28Q9NXS3 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2.01
KLHL28Q9NXS3 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
KLHL28Q9NXS3 AC011477.1-204ENST00000623416 1325 ntBASIC2.52□□□□□ -2.01
KLHL28Q9NXS3 SNORA68.1-201ENST00000364537 132 ntBASIC2.52□□□□□ -2.01
KLHL28Q9NXS3 SNORA23-201ENST00000365128 182 ntBASIC2.52□□□□□ -2.01
KLHL28Q9NXS3 RPL23AP29-201ENST00000397284 453 ntBASIC2.52□□□□□ -2.01
KLHL28Q9NXS3 AL109755.1-201ENST00000401791 649 ntBASIC2.52□□□□□ -2.01
KLHL28Q9NXS3 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC2.52□□□□□ -2.01
KLHL28Q9NXS3 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.52□□□□□ -2.01
KLHL28Q9NXS3 USP9YP11-201ENST00000427537 717 ntBASIC2.52□□□□□ -2.01
KLHL28Q9NXS3 GTF2IP20-201ENST00000431663 360 ntBASIC2.52□□□□□ -2.01
KLHL28Q9NXS3 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC2.52□□□□□ -2.01
KLHL28Q9NXS3 AC112653.1-201ENST00000443851 386 ntBASIC2.52□□□□□ -2.01
KLHL28Q9NXS3 MRPL50P4-201ENST00000446432 475 ntBASIC2.52□□□□□ -2.01
KLHL28Q9NXS3 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.52□□□□□ -2.01
KLHL28Q9NXS3 MTND1P31-201ENST00000449206 961 ntBASIC2.52□□□□□ -2.01
KLHL28Q9NXS3 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC2.52□□□□□ -2.01
KLHL28Q9NXS3 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.52□□□□□ -2.01
KLHL28Q9NXS3 AC104982.1-201ENST00000478775 574 ntBASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 188.5 ms