Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 LARP1BP2-201ENST00000486594 519 ntBASIC2.79□□□□□ -1.96
VPS35Q96QK1 MTCYBP43-201ENST00000513621 740 ntBASIC2.79□□□□□ -1.96
VPS35Q96QK1 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC2.79□□□□□ -1.96
VPS35Q96QK1 RNA5SP367-201ENST00000516557 118 ntBASIC2.79□□□□□ -1.96
VPS35Q96QK1 SNORA31.21-201ENST00000517180 77 ntBASIC2.79□□□□□ -1.96
VPS35Q96QK1 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC2.79□□□□□ -1.96
VPS35Q96QK1 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC2.79□□□□□ -1.96
VPS35Q96QK1 AL133271.1-201ENST00000538229 291 ntBASIC2.79□□□□□ -1.96
VPS35Q96QK1 HPRT1P3-201ENST00000539521 576 ntBASIC2.79□□□□□ -1.96
VPS35Q96QK1 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC2.79□□□□□ -1.96
VPS35Q96QK1 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC2.79□□□□□ -1.96
VPS35Q96QK1 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC2.79□□□□□ -1.96
VPS35Q96QK1 EIF4BP1-201ENST00000554881 351 ntBASIC2.79□□□□□ -1.96
VPS35Q96QK1 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC2.79□□□□□ -1.96
VPS35Q96QK1 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC2.79□□□□□ -1.96
VPS35Q96QK1 LARP7P3-201ENST00000579888 337 ntBASIC2.79□□□□□ -1.96
VPS35Q96QK1 VN1R82P-201ENST00000601481 356 ntBASIC2.79□□□□□ -1.96
VPS35Q96QK1 U73023.1-201ENST00000603134 700 ntBASIC2.79□□□□□ -1.96
VPS35Q96QK1 AC092953.2-201ENST00000608000 699 ntBASIC2.79□□□□□ -1.96
VPS35Q96QK1 AC007349.4-201ENST00000608114 532 ntBASIC2.79□□□□□ -1.96
VPS35Q96QK1 AC103710.4-201ENST00000609301 899 ntBASIC2.79□□□□□ -1.96
VPS35Q96QK1 AL020991.1-201ENST00000612314 373 ntBASIC2.79□□□□□ -1.96
VPS35Q96QK1 AC016597.2-201ENST00000613256 341 ntBASIC2.79□□□□□ -1.96
VPS35Q96QK1 AC013476.2-201ENST00000614456 459 ntBASIC2.79□□□□□ -1.96
VPS35Q96QK1 AL136981.2-201ENST00000617319 734 ntBASIC2.79□□□□□ -1.96
VPS35Q96QK1 AL355493.4-201ENST00000618530 292 ntBASIC2.79□□□□□ -1.96
VPS35Q96QK1 AC019226.1-201ENST00000625666 515 ntBASIC2.79□□□□□ -1.96
VPS35Q96QK1 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC2.79□□□□□ -1.96
VPS35Q96QK1 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.79□□□□□ -1.96
VPS35Q96QK1 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.79□□□□□ -1.96
VPS35Q96QK1 AC092593.1-201ENST00000515413 1815 ntBASIC2.78□□□□□ -1.96
VPS35Q96QK1 MIR26A1-201ENST00000362205 77 ntBASIC2.78□□□□□ -1.96
VPS35Q96QK1 RNU6-525P-201ENST00000363685 104 ntBASIC2.78□□□□□ -1.96
VPS35Q96QK1 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
VPS35Q96QK1 RNU6-741P-201ENST00000383889 107 ntBASIC2.78□□□□□ -1.96
VPS35Q96QK1 SNORA18.3-201ENST00000384122 132 ntBASIC2.78□□□□□ -1.96
VPS35Q96QK1 RNU6-754P-201ENST00000391166 107 ntBASIC2.78□□□□□ -1.96
VPS35Q96QK1 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.78□□□□□ -1.96
VPS35Q96QK1 SNORD88.1-201ENST00000408684 91 ntBASIC2.78□□□□□ -1.96
VPS35Q96QK1 MIR1289-1-201ENST00000408836 144 ntBASIC2.78□□□□□ -1.96
VPS35Q96QK1 MTCO1P17-201ENST00000411522 491 ntBASIC2.78□□□□□ -1.96
VPS35Q96QK1 MTND1P21-201ENST00000412991 285 ntBASIC2.78□□□□□ -1.96
VPS35Q96QK1 AL096701.2-201ENST00000416920 238 ntBASIC2.78□□□□□ -1.96
VPS35Q96QK1 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC2.78□□□□□ -1.96
VPS35Q96QK1 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC2.78□□□□□ -1.96
VPS35Q96QK1 COTL1P1-201ENST00000422309 375 ntBASIC2.78□□□□□ -1.96
VPS35Q96QK1 AC091390.3-201ENST00000426478 338 ntBASIC2.78□□□□□ -1.96
VPS35Q96QK1 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC2.78□□□□□ -1.96
VPS35Q96QK1 RPS29P6-201ENST00000438196 145 ntBASIC2.78□□□□□ -1.96
VPS35Q96QK1 AL117351.1-201ENST00000438864 766 ntBASIC2.78□□□□□ -1.96
VPS35Q96QK1 RPL23AP58-201ENST00000440453 469 ntBASIC2.78□□□□□ -1.96
VPS35Q96QK1 RPS24P13-201ENST00000442520 397 ntBASIC2.78□□□□□ -1.96
VPS35Q96QK1 CBWD4P-201ENST00000445695 655 ntBASIC2.78□□□□□ -1.96
VPS35Q96QK1 BMI1P1-201ENST00000445879 941 ntBASIC2.78□□□□□ -1.96
VPS35Q96QK1 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC2.78□□□□□ -1.96
VPS35Q96QK1 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC2.78□□□□□ -1.96
VPS35Q96QK1 AC091951.3-201ENST00000504093 246 ntBASIC2.78□□□□□ -1.96
VPS35Q96QK1 AC093809.1-201ENST00000509155 340 ntBASIC2.78□□□□□ -1.96
VPS35Q96QK1 RNU6-1282P-201ENST00000516735 96 ntBASIC2.78□□□□□ -1.96
VPS35Q96QK1 HMGN1P28-201ENST00000521340 364 ntBASIC2.78□□□□□ -1.96
VPS35Q96QK1 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC2.78□□□□□ -1.96
VPS35Q96QK1 AC068135.2-201ENST00000569293 1028 ntBASIC2.78□□□□□ -1.96
VPS35Q96QK1 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC2.78□□□□□ -1.96
VPS35Q96QK1 UBE2L4-201ENST00000587688 464 ntBASIC2.78□□□□□ -1.96
VPS35Q96QK1 AL139344.1-201ENST00000605228 195 ntBASIC2.78□□□□□ -1.96
VPS35Q96QK1 AL161629.2-201ENST00000615347 275 ntBASIC2.78□□□□□ -1.96
VPS35Q96QK1 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC2.78□□□□□ -1.96
VPS35Q96QK1 AL158801.5-201ENST00000623123 465 ntBASIC2.78□□□□□ -1.96
VPS35Q96QK1 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC2.78□□□□□ -1.96
VPS35Q96QK1 AL137790.1-201ENST00000634283 177 ntBASIC2.78□□□□□ -1.96
VPS35Q96QK1 AC110079.1-202ENST00000635213 138 ntBASIC2.78□□□□□ -1.96
VPS35Q96QK1 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.78□□□□□ -1.96
VPS35Q96QK1 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
VPS35Q96QK1 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.78□□□□□ -1.97
VPS35Q96QK1 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
VPS35Q96QK1 AC009902.3-201ENST00000606235 2172 ntBASIC2.77□□□□□ -1.97
VPS35Q96QK1 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.77□□□□□ -1.97
VPS35Q96QK1 AL672167.1-206ENST00000356293 943 ntBASIC2.77□□□□□ -1.97
VPS35Q96QK1 RNU6-432P-201ENST00000384196 109 ntBASIC2.77□□□□□ -1.97
VPS35Q96QK1 AL590084.2-201ENST00000401481 382 ntBASIC2.77□□□□□ -1.97
VPS35Q96QK1 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC2.77□□□□□ -1.97
VPS35Q96QK1 AC087499.2-201ENST00000432861 149 ntBASIC2.77□□□□□ -1.97
VPS35Q96QK1 AC129850.1-201ENST00000436203 508 ntBASIC2.77□□□□□ -1.97
VPS35Q96QK1 RSU1P2-202ENST00000437884 485 ntBASIC2.77□□□□□ -1.97
VPS35Q96QK1 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC2.77□□□□□ -1.97
VPS35Q96QK1 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC2.77□□□□□ -1.97
VPS35Q96QK1 RPS20P20-201ENST00000460498 340 ntBASIC2.77□□□□□ -1.97
VPS35Q96QK1 AC034222.1-201ENST00000494052 532 ntBASIC2.77□□□□□ -1.97
VPS35Q96QK1 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC2.77□□□□□ -1.97
VPS35Q96QK1 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.77□□□□□ -1.97
VPS35Q96QK1 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC2.77□□□□□ -1.97
VPS35Q96QK1 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC2.77□□□□□ -1.97
VPS35Q96QK1 AHI1-217ENST00000534469 680 ntTSL 3 BASIC2.77□□□□□ -1.97
VPS35Q96QK1 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC2.77□□□□□ -1.97
VPS35Q96QK1 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC2.77□□□□□ -1.97
VPS35Q96QK1 MTND4P33-201ENST00000556706 766 ntBASIC2.77□□□□□ -1.97
VPS35Q96QK1 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC2.77□□□□□ -1.97
VPS35Q96QK1 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC2.77□□□□□ -1.97
VPS35Q96QK1 CYCSP39-201ENST00000565821 309 ntBASIC2.77□□□□□ -1.97
VPS35Q96QK1 AC011471.1-201ENST00000585766 187 ntBASIC2.77□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 110.6 ms