Protein–RNA interactions for Protein: Q96JB5

CDK5RAP3, CDK5 regulatory subunit-associated protein 3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3Q96JB5 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 HSPE1P11-201ENST00000339579 310 ntBASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 RNU1-39P-201ENST00000383897 165 ntBASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 Y_RNA.402-201ENST00000383972 102 ntBASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 HMGN2P8-201ENST00000391458 268 ntBASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 AC068050.1-201ENST00000394891 380 ntBASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 AL136372.1-201ENST00000403060 228 ntBASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 HMGB3P20-201ENST00000417997 600 ntBASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 MTCO1P39-201ENST00000426148 480 ntBASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 ARF4P2-201ENST00000430209 526 ntBASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 RPS15AP9-201ENST00000439856 381 ntBASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 MTCO2P3-201ENST00000442543 421 ntBASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 MTCO3P45-201ENST00000443036 613 ntBASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 RPL23AP31-201ENST00000456160 467 ntBASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 AC027673.1-201ENST00000456245 405 ntBASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 AC022364.2-201ENST00000457963 554 ntBASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 IL7R-208ENST00000511982 612 ntTSL 2 BASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 Y_RNA.693-201ENST00000516641 110 ntBASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 RNU6-1178P-201ENST00000516674 107 ntBASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 SCARNA14-201ENST00000516903 136 ntBASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 OR4R1P-201ENST00000529879 463 ntBASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 HSPE1P5-201ENST00000561489 272 ntBASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 AL360157.1-201ENST00000565962 87 ntBASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 AC025678.1-201ENST00000567861 338 ntBASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 SNORA59B-202ENST00000578183 701 ntBASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 AC087499.8-201ENST00000578406 226 ntBASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 MIR5047-201ENST00000579212 100 ntBASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 AL356321.1-201ENST00000621360 228 ntBASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 AC079684.1-201ENST00000621405 437 ntBASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 TEX41-265ENST00000627785 704 ntTSL 5 BASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 AC138915.3-201ENST00000562908 1389 ntBASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 TAB3P1-202ENST00000452645 1634 ntBASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 AC093536.2-201ENST00000565257 1406 ntBASIC4.21□□□□□ -1.74
CDK5RAP3Q96JB5 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
CDK5RAP3Q96JB5 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC4.2□□□□□ -1.74
CDK5RAP3Q96JB5 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
CDK5RAP3Q96JB5 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CDK5RAP3Q96JB5 RNU6-1120P-201ENST00000362988 108 ntBASIC4.2□□□□□ -1.74
CDK5RAP3Q96JB5 RNY4P14-201ENST00000363656 96 ntBASIC4.2□□□□□ -1.74
CDK5RAP3Q96JB5 RNU6-1283P-201ENST00000365314 105 ntBASIC4.2□□□□□ -1.74
CDK5RAP3Q96JB5 Y_RNA.381-201ENST00000365666 102 ntBASIC4.2□□□□□ -1.74
CDK5RAP3Q96JB5 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC4.2□□□□□ -1.74
CDK5RAP3Q96JB5 MIR558-201ENST00000384920 94 ntBASIC4.2□□□□□ -1.74
CDK5RAP3Q96JB5 RPS4XP8-201ENST00000402039 771 ntBASIC4.2□□□□□ -1.74
CDK5RAP3Q96JB5 AP000567.1-201ENST00000406413 156 ntBASIC4.2□□□□□ -1.74
CDK5RAP3Q96JB5 MIR1193-201ENST00000408109 78 ntBASIC4.2□□□□□ -1.74
CDK5RAP3Q96JB5 RN7SKP156-201ENST00000410308 342 ntBASIC4.2□□□□□ -1.74
CDK5RAP3Q96JB5 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CDK5RAP3Q96JB5 USP9YP27-201ENST00000418455 438 ntBASIC4.2□□□□□ -1.74
CDK5RAP3Q96JB5 AL139247.1-201ENST00000422768 325 ntBASIC4.2□□□□□ -1.74
CDK5RAP3Q96JB5 OR2AS1P-201ENST00000427827 319 ntBASIC4.2□□□□□ -1.74
CDK5RAP3Q96JB5 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC4.2□□□□□ -1.74
CDK5RAP3Q96JB5 AC024082.2-201ENST00000434771 238 ntBASIC4.2□□□□□ -1.74
CDK5RAP3Q96JB5 RPS20P5-201ENST00000434808 360 ntBASIC4.2□□□□□ -1.74
CDK5RAP3Q96JB5 BNIP3P2-201ENST00000441221 577 ntBASIC4.2□□□□□ -1.74
CDK5RAP3Q96JB5 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC4.2□□□□□ -1.74
CDK5RAP3Q96JB5 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC4.2□□□□□ -1.74
CDK5RAP3Q96JB5 ENSA-210ENST00000503241 574 ntTSL 3 BASIC4.2□□□□□ -1.74
CDK5RAP3Q96JB5 VN1R104P-201ENST00000505115 1009 ntBASIC4.2□□□□□ -1.74
CDK5RAP3Q96JB5 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC4.2□□□□□ -1.74
CDK5RAP3Q96JB5 RNU6-390P-201ENST00000516259 103 ntBASIC4.2□□□□□ -1.74
CDK5RAP3Q96JB5 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC4.2□□□□□ -1.74
CDK5RAP3Q96JB5 AL359212.1-201ENST00000556608 614 ntBASIC4.2□□□□□ -1.74
CDK5RAP3Q96JB5 AC008536.2-201ENST00000607284 349 ntBASIC4.2□□□□□ -1.74
CDK5RAP3Q96JB5 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC4.2□□□□□ -1.74
CDK5RAP3Q96JB5 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC4.2□□□□□ -1.74
CDK5RAP3Q96JB5 SNHG22-203ENST00000617833 660 ntBASIC4.2□□□□□ -1.74
CDK5RAP3Q96JB5 AL731566.2-201ENST00000618971 317 ntBASIC4.2□□□□□ -1.74
CDK5RAP3Q96JB5 XIST_intron.1-201ENST00000619444 68 ntBASIC4.2□□□□□ -1.74
CDK5RAP3Q96JB5 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC4.2□□□□□ -1.74
CDK5RAP3Q96JB5 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
CDK5RAP3Q96JB5 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CDK5RAP3Q96JB5 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC4.2□□□□□ -1.74
CDK5RAP3Q96JB5 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.2□□□□□ -1.74
CDK5RAP3Q96JB5 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC4.19□□□□□ -1.74
CDK5RAP3Q96JB5 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC4.19□□□□□ -1.74
CDK5RAP3Q96JB5 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC4.19□□□□□ -1.74
CDK5RAP3Q96JB5 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
CDK5RAP3Q96JB5 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
CDK5RAP3Q96JB5 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
CDK5RAP3Q96JB5 RNU6-173P-201ENST00000364215 104 ntBASIC4.19□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 131.6 ms