Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AC084373.1-201ENST00000603311 235 ntBASIC1.13□□□□□ -2.23
USF3Q68DE3 AL390240.1-201ENST00000612950 384 ntBASIC1.13□□□□□ -2.23
USF3Q68DE3 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.13□□□□□ -2.23
USF3Q68DE3 AC008121.3-201ENST00000618726 433 ntBASIC1.13□□□□□ -2.23
USF3Q68DE3 AC011330.2-201ENST00000621680 635 ntBASIC1.13□□□□□ -2.23
USF3Q68DE3 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC1.13□□□□□ -2.23
USF3Q68DE3 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC1.12□□□□□ -2.23
USF3Q68DE3 ZNF519P1-201ENST00000449011 1626 ntBASIC1.12□□□□□ -2.23
USF3Q68DE3 RNU6-697P-201ENST00000363348 107 ntBASIC1.12□□□□□ -2.23
USF3Q68DE3 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC1.12□□□□□ -2.23
USF3Q68DE3 RNU6-1032P-201ENST00000384100 107 ntBASIC1.12□□□□□ -2.23
USF3Q68DE3 FO393413.1-201ENST00000402892 195 ntBASIC1.12□□□□□ -2.23
USF3Q68DE3 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC1.12□□□□□ -2.23
USF3Q68DE3 AL513343.1-201ENST00000451818 792 ntBASIC1.12□□□□□ -2.23
USF3Q68DE3 AC022690.1-201ENST00000526681 550 ntBASIC1.12□□□□□ -2.23
USF3Q68DE3 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC1.12□□□□□ -2.23
USF3Q68DE3 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC1.12□□□□□ -2.23
USF3Q68DE3 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC1.12□□□□□ -2.23
USF3Q68DE3 AC002487.1-201ENST00000604565 994 ntBASIC1.12□□□□□ -2.23
USF3Q68DE3 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC1.12□□□□□ -2.23
USF3Q68DE3 AC008083.4-201ENST00000615076 444 ntBASIC1.12□□□□□ -2.23
USF3Q68DE3 uc_338.9-201ENST00000617424 182 ntBASIC1.12□□□□□ -2.23
USF3Q68DE3 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC1.12□□□□□ -2.23
USF3Q68DE3 MT-TP-201ENST00000387461 68 ntBASIC1.12□□□□□ -2.23
USF3Q68DE3 SNORD56-201ENST00000413522 71 ntBASIC1.12□□□□□ -2.23
USF3Q68DE3 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC1.12□□□□□ -2.23
USF3Q68DE3 Z85994.2-201ENST00000434327 452 ntBASIC1.12□□□□□ -2.23
USF3Q68DE3 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC1.12□□□□□ -2.23
USF3Q68DE3 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC1.12□□□□□ -2.23
USF3Q68DE3 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC1.12□□□□□ -2.23
USF3Q68DE3 AC125611.2-201ENST00000551907 647 ntBASIC1.12□□□□□ -2.23
USF3Q68DE3 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC1.12□□□□□ -2.23
USF3Q68DE3 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC1.12□□□□□ -2.23
USF3Q68DE3 VN1R81P-201ENST00000602085 372 ntBASIC1.12□□□□□ -2.23
USF3Q68DE3 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC1.12□□□□□ -2.23
USF3Q68DE3 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC1.12□□□□□ -2.23
USF3Q68DE3 MIR6076-201ENST00000617521 113 ntBASIC1.12□□□□□ -2.23
USF3Q68DE3 CDC27P3-201ENST00000635418 1910 ntBASIC1.12□□□□□ -2.23
USF3Q68DE3 CD24P4-201ENST00000382840 243 ntBASIC1.11□□□□□ -2.23
USF3Q68DE3 MIR758-201ENST00000390227 88 ntBASIC1.11□□□□□ -2.23
USF3Q68DE3 RNU6-1077P-201ENST00000410506 102 ntBASIC1.11□□□□□ -2.23
USF3Q68DE3 HMGN1P14-201ENST00000412459 517 ntBASIC1.11□□□□□ -2.23
USF3Q68DE3 RPS12P24-201ENST00000412619 387 ntBASIC1.11□□□□□ -2.23
USF3Q68DE3 ZNF90P2-204ENST00000419323 1075 ntBASIC1.11□□□□□ -2.23
USF3Q68DE3 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC1.11□□□□□ -2.23
USF3Q68DE3 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC1.11□□□□□ -2.23
USF3Q68DE3 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC1.11□□□□□ -2.23
USF3Q68DE3 TPMTP4-201ENST00000450749 678 ntBASIC1.11□□□□□ -2.23
USF3Q68DE3 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1.11□□□□□ -2.23
USF3Q68DE3 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC1.11□□□□□ -2.23
USF3Q68DE3 RN7SKP277-201ENST00000516895 283 ntBASIC1.11□□□□□ -2.23
USF3Q68DE3 HMGB1P46-201ENST00000520062 610 ntBASIC1.11□□□□□ -2.23
USF3Q68DE3 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC1.11□□□□□ -2.23
USF3Q68DE3 PCNAP1-202ENST00000595299 752 ntBASIC1.11□□□□□ -2.23
USF3Q68DE3 AC069304.3-201ENST00000603938 1084 ntBASIC1.11□□□□□ -2.23
USF3Q68DE3 BNIP3P4-201ENST00000604946 565 ntBASIC1.11□□□□□ -2.23
USF3Q68DE3 AP000676.4-201ENST00000624659 623 ntBASIC1.11□□□□□ -2.23
USF3Q68DE3 AC099654.7-201ENST00000635788 2127 ntBASIC1.11□□□□□ -2.23
USF3Q68DE3 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC1.11□□□□□ -2.23
USF3Q68DE3 OR1L1-202ENST00000373686 1083 ntBASIC1.11□□□□□ -2.23
USF3Q68DE3 RNU6-1080P-201ENST00000383982 107 ntBASIC1.11□□□□□ -2.23
USF3Q68DE3 MIR320B1-201ENST00000390209 79 ntBASIC1.11□□□□□ -2.23
USF3Q68DE3 AL365400.1-201ENST00000431854 640 ntBASIC1.11□□□□□ -2.23
USF3Q68DE3 LSM1P1-201ENST00000438629 273 ntBASIC1.11□□□□□ -2.23
USF3Q68DE3 CALM1P1-201ENST00000442082 433 ntBASIC1.11□□□□□ -2.23
USF3Q68DE3 RPS26P56-201ENST00000444468 240 ntBASIC1.11□□□□□ -2.23
USF3Q68DE3 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC1.11□□□□□ -2.23
USF3Q68DE3 RPS3AP22-201ENST00000488297 769 ntBASIC1.11□□□□□ -2.23
USF3Q68DE3 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC1.11□□□□□ -2.23
USF3Q68DE3 CASP1P1-201ENST00000526345 212 ntBASIC1.11□□□□□ -2.23
USF3Q68DE3 HSPE1P3-201ENST00000559254 309 ntBASIC1.11□□□□□ -2.23
USF3Q68DE3 CBX3P2-202ENST00000583365 535 ntBASIC1.11□□□□□ -2.23
USF3Q68DE3 AC073413.2-201ENST00000604332 360 ntBASIC1.11□□□□□ -2.23
USF3Q68DE3 AC079597.1-201ENST00000624306 508 ntBASIC1.11□□□□□ -2.23
USF3Q68DE3 AL137003.2-201ENST00000606924 2538 ntBASIC1.1□□□□□ -2.23
USF3Q68DE3 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC1.1□□□□□ -2.23
USF3Q68DE3 AC233728.2-201ENST00000425348 757 ntBASIC1.1□□□□□ -2.23
USF3Q68DE3 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
USF3Q68DE3 AL513321.1-201ENST00000441175 761 ntBASIC1.1□□□□□ -2.23
USF3Q68DE3 SNRPGP13-201ENST00000442212 177 ntBASIC1.1□□□□□ -2.23
USF3Q68DE3 KATNBL1P3-201ENST00000443475 909 ntBASIC1.1□□□□□ -2.23
USF3Q68DE3 AC006390.1-201ENST00000508068 283 ntBASIC1.1□□□□□ -2.23
USF3Q68DE3 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC1.1□□□□□ -2.23
USF3Q68DE3 AC008885.2-201ENST00000509506 930 ntBASIC1.1□□□□□ -2.23
USF3Q68DE3 AC083923.1-201ENST00000523708 376 ntBASIC1.1□□□□□ -2.23
USF3Q68DE3 AP005597.4-201ENST00000526762 229 ntBASIC1.1□□□□□ -2.23
USF3Q68DE3 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC1.1□□□□□ -2.23
USF3Q68DE3 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.1□□□□□ -2.23
USF3Q68DE3 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC1.1□□□□□ -2.23
USF3Q68DE3 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC1.1□□□□□ -2.23
USF3Q68DE3 AC090616.5-202ENST00000582111 297 ntBASIC1.1□□□□□ -2.23
USF3Q68DE3 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC1.1□□□□□ -2.23
USF3Q68DE3 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC1.1□□□□□ -2.23
USF3Q68DE3 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC1.1□□□□□ -2.23
USF3Q68DE3 AC020923.1-201ENST00000624021 917 ntBASIC1.1□□□□□ -2.23
USF3Q68DE3 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC1.1□□□□□ -2.23
USF3Q68DE3 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC1.1□□□□□ -2.23
USF3Q68DE3 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC1.1□□□□□ -2.23
USF3Q68DE3 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC1.1□□□□□ -2.23
USF3Q68DE3 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC1.09□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms