Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC4.26□□□□□ -1.73
VPS53Q5VIR6 AL356432.3-201ENST00000568952 465 ntBASIC4.26□□□□□ -1.73
VPS53Q5VIR6 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC4.26□□□□□ -1.73
VPS53Q5VIR6 MIR4429-201ENST00000580105 73 ntBASIC4.26□□□□□ -1.73
VPS53Q5VIR6 MIR3690-201ENST00000580266 75 ntBASIC4.26□□□□□ -1.73
VPS53Q5VIR6 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC4.26□□□□□ -1.73
VPS53Q5VIR6 MIR3118-1-201ENST00000581787 76 ntBASIC4.26□□□□□ -1.73
VPS53Q5VIR6 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC4.26□□□□□ -1.73
VPS53Q5VIR6 AL391646.1-201ENST00000603860 190 ntBASIC4.26□□□□□ -1.73
VPS53Q5VIR6 AC010591.1-201ENST00000603941 649 ntBASIC4.26□□□□□ -1.73
VPS53Q5VIR6 AL034351.1-201ENST00000605288 668 ntBASIC4.26□□□□□ -1.73
VPS53Q5VIR6 MIR98-201ENST00000606724 119 ntBASIC4.26□□□□□ -1.73
VPS53Q5VIR6 AL355472.4-201ENST00000610233 626 ntBASIC4.26□□□□□ -1.73
VPS53Q5VIR6 AL133173.2-201ENST00000614270 90 ntBASIC4.26□□□□□ -1.73
VPS53Q5VIR6 MIR1321-201ENST00000637766 79 ntBASIC4.26□□□□□ -1.73
VPS53Q5VIR6 AC068647.1-201ENST00000489539 2265 ntBASIC4.26□□□□□ -1.73
VPS53Q5VIR6 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
VPS53Q5VIR6 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
VPS53Q5VIR6 AC138915.3-201ENST00000562908 1389 ntBASIC4.26□□□□□ -1.73
VPS53Q5VIR6 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC4.25□□□□□ -1.73
VPS53Q5VIR6 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
VPS53Q5VIR6 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC4.25□□□□□ -1.73
VPS53Q5VIR6 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
VPS53Q5VIR6 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
VPS53Q5VIR6 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
VPS53Q5VIR6 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
VPS53Q5VIR6 RNU5E-1-201ENST00000362477 120 ntBASIC4.25□□□□□ -1.73
VPS53Q5VIR6 RNU6-181P-201ENST00000363225 107 ntBASIC4.25□□□□□ -1.73
VPS53Q5VIR6 RNU6-97P-201ENST00000363387 104 ntBASIC4.25□□□□□ -1.73
VPS53Q5VIR6 RNU6-1085P-201ENST00000363576 107 ntBASIC4.25□□□□□ -1.73
VPS53Q5VIR6 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
VPS53Q5VIR6 RNU6-114P-201ENST00000384704 105 ntBASIC4.25□□□□□ -1.73
VPS53Q5VIR6 U3.20-201ENST00000390909 217 ntBASIC4.25□□□□□ -1.73
VPS53Q5VIR6 AL136116.1-201ENST00000403591 381 ntBASIC4.25□□□□□ -1.73
VPS53Q5VIR6 RPS3AP24-201ENST00000407896 734 ntBASIC4.25□□□□□ -1.73
VPS53Q5VIR6 RN7SKP53-201ENST00000411337 315 ntBASIC4.25□□□□□ -1.73
VPS53Q5VIR6 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC4.25□□□□□ -1.73
VPS53Q5VIR6 AC092447.6-201ENST00000414578 210 ntBASIC4.25□□□□□ -1.73
VPS53Q5VIR6 CRYBB2P1-203ENST00000415709 538 ntBASIC4.25□□□□□ -1.73
VPS53Q5VIR6 AL109913.1-201ENST00000421173 514 ntBASIC4.25□□□□□ -1.73
VPS53Q5VIR6 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC4.25□□□□□ -1.73
VPS53Q5VIR6 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC4.25□□□□□ -1.73
VPS53Q5VIR6 ELOCP14-201ENST00000428070 331 ntBASIC4.25□□□□□ -1.73
VPS53Q5VIR6 CYCSP4-201ENST00000429682 331 ntBASIC4.25□□□□□ -1.73
VPS53Q5VIR6 ATP5JP1-201ENST00000431631 322 ntBASIC4.25□□□□□ -1.73
VPS53Q5VIR6 HSPD1P21-201ENST00000436541 245 ntBASIC4.25□□□□□ -1.73
VPS53Q5VIR6 AL121601.2-201ENST00000438019 707 ntBASIC4.25□□□□□ -1.73
VPS53Q5VIR6 ELOCP7-201ENST00000439968 331 ntBASIC4.25□□□□□ -1.73
VPS53Q5VIR6 AC021382.1-201ENST00000483523 359 ntBASIC4.25□□□□□ -1.73
VPS53Q5VIR6 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC4.25□□□□□ -1.73
VPS53Q5VIR6 COX7A2P2-201ENST00000505291 250 ntBASIC4.25□□□□□ -1.73
VPS53Q5VIR6 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC4.25□□□□□ -1.73
VPS53Q5VIR6 Y_RNA.693-201ENST00000516641 110 ntBASIC4.25□□□□□ -1.73
VPS53Q5VIR6 RNU6-445P-201ENST00000516949 107 ntBASIC4.25□□□□□ -1.73
VPS53Q5VIR6 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC4.25□□□□□ -1.73
VPS53Q5VIR6 MIR4444-1-201ENST00000581696 74 ntBASIC4.25□□□□□ -1.73
VPS53Q5VIR6 MIR4444-2-201ENST00000584390 74 ntBASIC4.25□□□□□ -1.73
VPS53Q5VIR6 AC091135.1-201ENST00000585943 307 ntBASIC4.25□□□□□ -1.73
VPS53Q5VIR6 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC4.25□□□□□ -1.73
VPS53Q5VIR6 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC4.25□□□□□ -1.73
VPS53Q5VIR6 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC4.25□□□□□ -1.73
VPS53Q5VIR6 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC4.25□□□□□ -1.73
VPS53Q5VIR6 AC012507.3-201ENST00000603556 477 ntBASIC4.25□□□□□ -1.73
VPS53Q5VIR6 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC4.25□□□□□ -1.73
VPS53Q5VIR6 AC092794.2-201ENST00000620933 563 ntBASIC4.25□□□□□ -1.73
VPS53Q5VIR6 AC091953.2-201ENST00000623979 160 ntBASIC4.25□□□□□ -1.73
VPS53Q5VIR6 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC4.25□□□□□ -1.73
VPS53Q5VIR6 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
VPS53Q5VIR6 OTUD4P1-201ENST00000237841 3067 ntBASIC4.25□□□□□ -1.73
VPS53Q5VIR6 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
VPS53Q5VIR6 AC009902.3-201ENST00000606235 2172 ntBASIC4.24□□□□□ -1.73
VPS53Q5VIR6 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
VPS53Q5VIR6 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
VPS53Q5VIR6 FRG1CP-201ENST00000358464 769 ntBASIC4.24□□□□□ -1.73
VPS53Q5VIR6 SNORA71.3-201ENST00000362582 128 ntBASIC4.24□□□□□ -1.73
VPS53Q5VIR6 RNU4-1-201ENST00000363925 141 ntBASIC4.24□□□□□ -1.73
VPS53Q5VIR6 5S_rRNA.1-201ENST00000364415 116 ntBASIC4.24□□□□□ -1.73
VPS53Q5VIR6 Y_RNA.481-201ENST00000384373 102 ntBASIC4.24□□□□□ -1.73
VPS53Q5VIR6 MIR23B-201ENST00000384832 97 ntBASIC4.24□□□□□ -1.73
VPS53Q5VIR6 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC4.24□□□□□ -1.73
VPS53Q5VIR6 CCDC58P2-201ENST00000417131 366 ntBASIC4.24□□□□□ -1.73
VPS53Q5VIR6 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC4.24□□□□□ -1.73
VPS53Q5VIR6 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC4.24□□□□□ -1.73
VPS53Q5VIR6 MTCO2P29-201ENST00000465212 189 ntBASIC4.24□□□□□ -1.73
VPS53Q5VIR6 UBE2Q2P9-201ENST00000490086 202 ntBASIC4.24□□□□□ -1.73
VPS53Q5VIR6 AC023194.1-201ENST00000493084 308 ntBASIC4.24□□□□□ -1.73
VPS53Q5VIR6 AP003072.2-201ENST00000527756 676 ntBASIC4.24□□□□□ -1.73
VPS53Q5VIR6 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC4.24□□□□□ -1.73
VPS53Q5VIR6 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC4.24□□□□□ -1.73
VPS53Q5VIR6 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC4.24□□□□□ -1.73
VPS53Q5VIR6 AL512360.1-201ENST00000555346 234 ntBASIC4.24□□□□□ -1.73
VPS53Q5VIR6 AC025678.1-201ENST00000567861 338 ntBASIC4.24□□□□□ -1.73
VPS53Q5VIR6 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC4.24□□□□□ -1.73
VPS53Q5VIR6 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC4.24□□□□□ -1.73
VPS53Q5VIR6 AC067852.3-201ENST00000589177 561 ntBASIC4.24□□□□□ -1.73
VPS53Q5VIR6 AC008536.2-201ENST00000607284 349 ntBASIC4.24□□□□□ -1.73
VPS53Q5VIR6 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC4.24□□□□□ -1.73
VPS53Q5VIR6 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC4.24□□□□□ -1.73
VPS53Q5VIR6 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC4.24□□□□□ -1.73
VPS53Q5VIR6 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 118.5 ms