Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC4.31□□□□□ -1.72
USP39Q53GS9 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.31□□□□□ -1.72
USP39Q53GS9 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
USP39Q53GS9 XIAPP3-201ENST00000312918 795 ntBASIC4.31□□□□□ -1.72
USP39Q53GS9 AL161781.1-201ENST00000354277 403 ntBASIC4.31□□□□□ -1.72
USP39Q53GS9 Y_RNA.112-201ENST00000363250 102 ntBASIC4.31□□□□□ -1.72
USP39Q53GS9 RNU4-66P-201ENST00000365199 138 ntBASIC4.31□□□□□ -1.72
USP39Q53GS9 RNU6-39P-201ENST00000384344 107 ntBASIC4.31□□□□□ -1.72
USP39Q53GS9 MIR200C-201ENST00000384980 68 ntBASIC4.31□□□□□ -1.72
USP39Q53GS9 RNU6-1106P-201ENST00000390845 107 ntBASIC4.31□□□□□ -1.72
USP39Q53GS9 SNORD37.1-201ENST00000390968 65 ntBASIC4.31□□□□□ -1.72
USP39Q53GS9 MTCYBP4-201ENST00000401524 249 ntBASIC4.31□□□□□ -1.72
USP39Q53GS9 AL356421.1-201ENST00000403255 413 ntBASIC4.31□□□□□ -1.72
USP39Q53GS9 RPL21P65-201ENST00000406094 466 ntBASIC4.31□□□□□ -1.72
USP39Q53GS9 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC4.31□□□□□ -1.72
USP39Q53GS9 RPL37P1-201ENST00000432310 284 ntBASIC4.31□□□□□ -1.72
USP39Q53GS9 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.31□□□□□ -1.72
USP39Q53GS9 HMGB3P11-201ENST00000440127 604 ntBASIC4.31□□□□□ -1.72
USP39Q53GS9 AL731563.1-201ENST00000442202 214 ntBASIC4.31□□□□□ -1.72
USP39Q53GS9 HSPE1P28-201ENST00000443139 211 ntBASIC4.31□□□□□ -1.72
USP39Q53GS9 PRPS1P1-201ENST00000445305 876 ntBASIC4.31□□□□□ -1.72
USP39Q53GS9 AL358232.1-201ENST00000448030 501 ntBASIC4.31□□□□□ -1.72
USP39Q53GS9 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC4.31□□□□□ -1.72
USP39Q53GS9 NANOGP10-201ENST00000453325 895 ntBASIC4.31□□□□□ -1.72
USP39Q53GS9 snoU13.22-201ENST00000459428 104 ntBASIC4.31□□□□□ -1.72
USP39Q53GS9 RPL35AP15-201ENST00000468042 339 ntBASIC4.31□□□□□ -1.72
USP39Q53GS9 RPL7L1P8-201ENST00000469911 741 ntBASIC4.31□□□□□ -1.72
USP39Q53GS9 AP000893.1-201ENST00000474462 794 ntBASIC4.31□□□□□ -1.72
USP39Q53GS9 AC146944.2-203ENST00000502493 354 ntBASIC4.31□□□□□ -1.72
USP39Q53GS9 TXNP6-201ENST00000510190 310 ntBASIC4.31□□□□□ -1.72
USP39Q53GS9 AC139495.1-202ENST00000513164 354 ntBASIC4.31□□□□□ -1.72
USP39Q53GS9 LIAS-206ENST00000513731 826 ntTSL 5 BASIC4.31□□□□□ -1.72
USP39Q53GS9 MTCO2P24-201ENST00000515611 426 ntBASIC4.31□□□□□ -1.72
USP39Q53GS9 Y_RNA.682-201ENST00000516457 100 ntBASIC4.31□□□□□ -1.72
USP39Q53GS9 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
USP39Q53GS9 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
USP39Q53GS9 ZNF705CP-201ENST00000530515 889 ntBASIC4.31□□□□□ -1.72
USP39Q53GS9 AP000907.2-201ENST00000530827 353 ntBASIC4.31□□□□□ -1.72
USP39Q53GS9 CASP1-212ENST00000531166 300 ntTSL 5 BASIC4.31□□□□□ -1.72
USP39Q53GS9 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.31□□□□□ -1.72
USP39Q53GS9 AC135001.1-201ENST00000544546 283 ntBASIC4.31□□□□□ -1.72
USP39Q53GS9 AL118558.2-201ENST00000556294 238 ntBASIC4.31□□□□□ -1.72
USP39Q53GS9 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC4.31□□□□□ -1.72
USP39Q53GS9 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC4.31□□□□□ -1.72
USP39Q53GS9 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC4.31□□□□□ -1.72
USP39Q53GS9 AL121992.2-201ENST00000606262 256 ntBASIC4.31□□□□□ -1.72
USP39Q53GS9 AC004908.2-201ENST00000609090 574 ntBASIC4.31□□□□□ -1.72
USP39Q53GS9 AC130324.3-201ENST00000614165 542 ntBASIC4.31□□□□□ -1.72
USP39Q53GS9 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
USP39Q53GS9 MIR7154-201ENST00000620673 73 ntBASIC4.31□□□□□ -1.72
USP39Q53GS9 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
USP39Q53GS9 RLIMP1-201ENST00000339626 1680 ntBASIC4.31□□□□□ -1.72
USP39Q53GS9 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC4.31□□□□□ -1.72
USP39Q53GS9 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
USP39Q53GS9 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.31□□□□□ -1.72
USP39Q53GS9 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.31□□□□□ -1.72
USP39Q53GS9 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
USP39Q53GS9 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
USP39Q53GS9 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC4.3□□□□□ -1.72
USP39Q53GS9 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.3□□□□□ -1.72
USP39Q53GS9 CD36-221ENST00000534394 1741 ntTSL 2 BASIC4.3□□□□□ -1.72
USP39Q53GS9 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.3□□□□□ -1.72
USP39Q53GS9 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.3□□□□□ -1.72
USP39Q53GS9 AC107081.3-201ENST00000612715 2034 ntBASIC4.3□□□□□ -1.72
USP39Q53GS9 AL139276.1-201ENST00000311910 1001 ntBASIC4.3□□□□□ -1.72
USP39Q53GS9 RNA5SP307-201ENST00000362863 116 ntBASIC4.3□□□□□ -1.72
USP39Q53GS9 Y_RNA.148-201ENST00000363557 117 ntBASIC4.3□□□□□ -1.72
USP39Q53GS9 Y_RNA.167-201ENST00000363735 109 ntBASIC4.3□□□□□ -1.72
USP39Q53GS9 Y_RNA.414-201ENST00000384011 101 ntBASIC4.3□□□□□ -1.72
USP39Q53GS9 MIR124-3-201ENST00000384866 87 ntBASIC4.3□□□□□ -1.72
USP39Q53GS9 RNU6-903P-201ENST00000391270 109 ntBASIC4.3□□□□□ -1.72
USP39Q53GS9 AL121834.1-202ENST00000404494 277 ntBASIC4.3□□□□□ -1.72
USP39Q53GS9 RNU6-370P-201ENST00000411008 104 ntBASIC4.3□□□□□ -1.72
USP39Q53GS9 BX323014.1-201ENST00000412876 237 ntBASIC4.3□□□□□ -1.72
USP39Q53GS9 AC114482.1-201ENST00000418010 247 ntBASIC4.3□□□□□ -1.72
USP39Q53GS9 AC137499.1-201ENST00000427602 88 ntBASIC4.3□□□□□ -1.72
USP39Q53GS9 USP9YP16-201ENST00000430287 407 ntBASIC4.3□□□□□ -1.72
USP39Q53GS9 OR4K11P-201ENST00000431829 904 ntBASIC4.3□□□□□ -1.72
USP39Q53GS9 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC4.3□□□□□ -1.72
USP39Q53GS9 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC4.3□□□□□ -1.72
USP39Q53GS9 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.3□□□□□ -1.72
USP39Q53GS9 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC4.3□□□□□ -1.72
USP39Q53GS9 MRPS31P2-201ENST00000451581 518 ntBASIC4.3□□□□□ -1.72
USP39Q53GS9 USP9YP23-201ENST00000455085 407 ntBASIC4.3□□□□□ -1.72
USP39Q53GS9 RPL23AP81-201ENST00000455252 467 ntBASIC4.3□□□□□ -1.72
USP39Q53GS9 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC4.3□□□□□ -1.72
USP39Q53GS9 AL049714.1-201ENST00000466686 347 ntBASIC4.3□□□□□ -1.72
USP39Q53GS9 VN1R105P-201ENST00000486595 910 ntBASIC4.3□□□□□ -1.72
USP39Q53GS9 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC4.3□□□□□ -1.72
USP39Q53GS9 AC092436.1-201ENST00000506450 503 ntBASIC4.3□□□□□ -1.72
USP39Q53GS9 AC091885.1-201ENST00000506658 268 ntBASIC4.3□□□□□ -1.72
USP39Q53GS9 CCDC34P1-201ENST00000507441 517 ntBASIC4.3□□□□□ -1.72
USP39Q53GS9 AC018797.3-201ENST00000513388 1241 ntBASIC4.3□□□□□ -1.72
USP39Q53GS9 RNA5SP73-201ENST00000516744 108 ntBASIC4.3□□□□□ -1.72
USP39Q53GS9 RNA5SP143-201ENST00000516936 115 ntBASIC4.3□□□□□ -1.72
USP39Q53GS9 AC008694.2-201ENST00000517591 306 ntBASIC4.3□□□□□ -1.72
USP39Q53GS9 RNU6-988P-201ENST00000519081 107 ntBASIC4.3□□□□□ -1.72
USP39Q53GS9 IGLV3-26-201ENST00000520756 302 ntBASIC4.3□□□□□ -1.72
USP39Q53GS9 MGST1-215ENST00000540056 546 ntTSL 3 BASIC4.3□□□□□ -1.72
USP39Q53GS9 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC4.3□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 156.3 ms