Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 LARP1BP2-201ENST00000486594 519 ntBASIC2.99□□□□□ -1.93
CCDC40Q4G0X9 SEM1P1-201ENST00000506694 209 ntBASIC2.99□□□□□ -1.93
CCDC40Q4G0X9 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
CCDC40Q4G0X9 AC034159.1-201ENST00000513885 583 ntBASIC2.99□□□□□ -1.93
CCDC40Q4G0X9 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC2.99□□□□□ -1.93
CCDC40Q4G0X9 RNU6-1282P-201ENST00000516735 96 ntBASIC2.99□□□□□ -1.93
CCDC40Q4G0X9 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC2.99□□□□□ -1.93
CCDC40Q4G0X9 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC2.99□□□□□ -1.93
CCDC40Q4G0X9 ERP27-202ENST00000540097 993 ntTSL 2 BASIC2.99□□□□□ -1.93
CCDC40Q4G0X9 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC2.99□□□□□ -1.93
CCDC40Q4G0X9 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
CCDC40Q4G0X9 MTND1P8-201ENST00000571424 950 ntBASIC2.99□□□□□ -1.93
CCDC40Q4G0X9 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC2.99□□□□□ -1.93
CCDC40Q4G0X9 AL158042.1-201ENST00000605338 460 ntBASIC2.99□□□□□ -1.93
CCDC40Q4G0X9 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
CCDC40Q4G0X9 AC103710.4-201ENST00000609301 899 ntBASIC2.99□□□□□ -1.93
CCDC40Q4G0X9 AC097478.2-201ENST00000610572 514 ntBASIC2.99□□□□□ -1.93
CCDC40Q4G0X9 AC008669.1-201ENST00000565823 2178 ntBASIC2.99□□□□□ -1.93
CCDC40Q4G0X9 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
CCDC40Q4G0X9 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC2.99□□□□□ -1.93
CCDC40Q4G0X9 AC007785.2-201ENST00000598627 1916 ntBASIC2.99□□□□□ -1.93
CCDC40Q4G0X9 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC2.99□□□□□ -1.93
CCDC40Q4G0X9 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
CCDC40Q4G0X9 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
CCDC40Q4G0X9 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.98□□□□□ -1.93
CCDC40Q4G0X9 AL138713.1-201ENST00000624026 2130 ntBASIC2.98□□□□□ -1.93
CCDC40Q4G0X9 DDX10P1-201ENST00000448545 1933 ntBASIC2.98□□□□□ -1.93
CCDC40Q4G0X9 VTRNA1-1-201ENST00000363120 99 ntBASIC2.98□□□□□ -1.93
CCDC40Q4G0X9 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
CCDC40Q4G0X9 RNU6-1035P-201ENST00000384477 107 ntBASIC2.98□□□□□ -1.93
CCDC40Q4G0X9 SNORA44-201ENST00000384584 132 ntBASIC2.98□□□□□ -1.93
CCDC40Q4G0X9 RNA5SP354-201ENST00000391247 136 ntBASIC2.98□□□□□ -1.93
CCDC40Q4G0X9 RNU6-516P-201ENST00000411381 104 ntBASIC2.98□□□□□ -1.93
CCDC40Q4G0X9 Z85995.1-201ENST00000415547 335 ntBASIC2.98□□□□□ -1.93
CCDC40Q4G0X9 AL096701.2-201ENST00000416920 238 ntBASIC2.98□□□□□ -1.93
CCDC40Q4G0X9 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC2.98□□□□□ -1.93
CCDC40Q4G0X9 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC2.98□□□□□ -1.93
CCDC40Q4G0X9 RPL23AP83-201ENST00000434984 473 ntBASIC2.98□□□□□ -1.93
CCDC40Q4G0X9 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC2.98□□□□□ -1.93
CCDC40Q4G0X9 ATG12P2-201ENST00000456830 416 ntBASIC2.98□□□□□ -1.93
CCDC40Q4G0X9 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC2.98□□□□□ -1.93
CCDC40Q4G0X9 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC2.98□□□□□ -1.93
CCDC40Q4G0X9 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC2.98□□□□□ -1.93
CCDC40Q4G0X9 MTND5P4-201ENST00000514978 288 ntBASIC2.98□□□□□ -1.93
CCDC40Q4G0X9 RNU6-840P-201ENST00000517275 65 ntBASIC2.98□□□□□ -1.93
CCDC40Q4G0X9 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.98□□□□□ -1.93
CCDC40Q4G0X9 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC2.98□□□□□ -1.93
CCDC40Q4G0X9 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC2.98□□□□□ -1.93
CCDC40Q4G0X9 AL355836.1-201ENST00000555951 870 ntBASIC2.98□□□□□ -1.93
CCDC40Q4G0X9 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC2.98□□□□□ -1.93
CCDC40Q4G0X9 CYCSP39-201ENST00000565821 309 ntBASIC2.98□□□□□ -1.93
CCDC40Q4G0X9 MIR3200-201ENST00000580767 85 ntBASIC2.98□□□□□ -1.93
CCDC40Q4G0X9 AL592221.1-201ENST00000605266 382 ntBASIC2.98□□□□□ -1.93
CCDC40Q4G0X9 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.98□□□□□ -1.93
CCDC40Q4G0X9 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC2.98□□□□□ -1.93
CCDC40Q4G0X9 AP000484.1-201ENST00000620067 1252 ntBASIC2.98□□□□□ -1.93
CCDC40Q4G0X9 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC2.98□□□□□ -1.93
CCDC40Q4G0X9 CR381653.2-201ENST00000624041 768 ntBASIC2.98□□□□□ -1.93
CCDC40Q4G0X9 AC019226.1-201ENST00000625666 515 ntBASIC2.98□□□□□ -1.93
CCDC40Q4G0X9 VPS8-228ENST00000628962 207 ntTSL 5 BASIC2.98□□□□□ -1.93
CCDC40Q4G0X9 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC2.98□□□□□ -1.93
CCDC40Q4G0X9 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.98□□□□□ -1.93
CCDC40Q4G0X9 AC026241.1-201ENST00000517873 2142 ntBASIC2.98□□□□□ -1.93
CCDC40Q4G0X9 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.98□□□□□ -1.93
CCDC40Q4G0X9 ZNF519P1-201ENST00000449011 1626 ntBASIC2.97□□□□□ -1.93
CCDC40Q4G0X9 AL672167.1-206ENST00000356293 943 ntBASIC2.97□□□□□ -1.93
CCDC40Q4G0X9 RNU6-853P-201ENST00000364306 107 ntBASIC2.97□□□□□ -1.93
CCDC40Q4G0X9 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC2.97□□□□□ -1.93
CCDC40Q4G0X9 RNU6-754P-201ENST00000391166 107 ntBASIC2.97□□□□□ -1.93
CCDC40Q4G0X9 AL138827.1-201ENST00000402666 306 ntBASIC2.97□□□□□ -1.93
CCDC40Q4G0X9 MTND1P21-201ENST00000412991 285 ntBASIC2.97□□□□□ -1.93
CCDC40Q4G0X9 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC2.97□□□□□ -1.93
CCDC40Q4G0X9 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC2.97□□□□□ -1.93
CCDC40Q4G0X9 AC083875.1-201ENST00000419509 405 ntBASIC2.97□□□□□ -1.93
CCDC40Q4G0X9 UBE2V1P13-201ENST00000436983 439 ntBASIC2.97□□□□□ -1.93
CCDC40Q4G0X9 AL117351.1-201ENST00000438864 766 ntBASIC2.97□□□□□ -1.93
CCDC40Q4G0X9 CBWD4P-201ENST00000445695 655 ntBASIC2.97□□□□□ -1.93
CCDC40Q4G0X9 AP000542.1-201ENST00000448473 371 ntBASIC2.97□□□□□ -1.93
CCDC40Q4G0X9 AC090525.1-201ENST00000479116 478 ntBASIC2.97□□□□□ -1.93
CCDC40Q4G0X9 HIGD1AP13-201ENST00000509878 289 ntBASIC2.97□□□□□ -1.93
CCDC40Q4G0X9 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC2.97□□□□□ -1.93
CCDC40Q4G0X9 SCARNA1-201ENST00000517138 166 ntBASIC2.97□□□□□ -1.93
CCDC40Q4G0X9 AP002748.2-201ENST00000528671 348 ntBASIC2.97□□□□□ -1.93
CCDC40Q4G0X9 AC068135.2-201ENST00000569293 1028 ntBASIC2.97□□□□□ -1.93
CCDC40Q4G0X9 RPL23AP84-201ENST00000571193 464 ntBASIC2.97□□□□□ -1.93
CCDC40Q4G0X9 AL035413.2-201ENST00000604801 525 ntBASIC2.97□□□□□ -1.93
CCDC40Q4G0X9 AC093732.2-201ENST00000607950 274 ntBASIC2.97□□□□□ -1.93
CCDC40Q4G0X9 AC004852.3-201ENST00000614131 326 ntBASIC2.97□□□□□ -1.93
CCDC40Q4G0X9 AC013476.2-201ENST00000614456 459 ntBASIC2.97□□□□□ -1.93
CCDC40Q4G0X9 AL136981.2-201ENST00000617319 734 ntBASIC2.97□□□□□ -1.93
CCDC40Q4G0X9 AC013470.4-201ENST00000619978 986 ntBASIC2.97□□□□□ -1.93
CCDC40Q4G0X9 OR4G3P-201ENST00000633500 913 ntBASIC2.97□□□□□ -1.93
CCDC40Q4G0X9 AC099063.3-201ENST00000642066 185 ntBASIC2.97□□□□□ -1.93
CCDC40Q4G0X9 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.97□□□□□ -1.93
CCDC40Q4G0X9 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.93
CCDC40Q4G0X9 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.96□□□□□ -1.94
CCDC40Q4G0X9 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
CCDC40Q4G0X9 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
CCDC40Q4G0X9 RNU6-462P-201ENST00000362659 105 ntBASIC2.96□□□□□ -1.94
CCDC40Q4G0X9 SNORA25.6-201ENST00000364121 118 ntBASIC2.96□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 86.4 ms