Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 AC004696.1-201ENST00000614345 607 ntBASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 AL591424.2-201ENST00000617023 128 ntBASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 AC103858.2-201ENST00000621471 543 ntBASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 FAM35DP-201ENST00000323387 2712 ntBASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.87□□□□□ -1.79
PTCHD3Q3KNS1 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 AL139276.1-201ENST00000311910 1001 ntBASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 RPL7P26-201ENST00000333817 754 ntBASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 ACEA_U3.1-201ENST00000363057 217 ntBASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 RNA5SP235-201ENST00000365411 114 ntBASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 AL359837.1-201ENST00000381357 287 ntBASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 SNORA48.7-201ENST00000391302 135 ntBASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 AL136116.1-201ENST00000403591 381 ntBASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 RN7SKP202-201ENST00000410439 330 ntBASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 OR9R1P-201ENST00000412200 877 ntBASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 AC012498.1-201ENST00000424037 437 ntBASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 TBCAP1-201ENST00000436520 327 ntBASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 RPS24P6-201ENST00000452670 400 ntBASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 SNORA84-201ENST00000459229 133 ntBASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 AC233702.1-201ENST00000482905 502 ntBASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 RPL38P4-201ENST00000502376 214 ntBASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 SNORA31.20-201ENST00000517111 133 ntBASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 RNU1-45P-201ENST00000517191 141 ntBASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 SNORA31.22-201ENST00000517204 135 ntBASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 AC091516.1-201ENST00000549191 703 ntBASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 AC007424.1-203ENST00000554613 687 ntBASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 AC024619.4-201ENST00000580924 316 ntBASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 AC174048.1-201ENST00000603389 144 ntBASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 AC006504.8-201ENST00000621046 635 ntBASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 AC009033.1-201ENST00000624279 431 ntBASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.86□□□□□ -1.79
PTCHD3Q3KNS1 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC3.85□□□□□ -1.79
PTCHD3Q3KNS1 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
PTCHD3Q3KNS1 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC3.85□□□□□ -1.79
PTCHD3Q3KNS1 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.85□□□□□ -1.79
PTCHD3Q3KNS1 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC3.85□□□□□ -1.79
PTCHD3Q3KNS1 RNU6-179P-201ENST00000363350 107 ntBASIC3.85□□□□□ -1.79
PTCHD3Q3KNS1 Y_RNA.157-201ENST00000363638 102 ntBASIC3.85□□□□□ -1.79
PTCHD3Q3KNS1 MIR554-201ENST00000384874 96 ntBASIC3.85□□□□□ -1.79
PTCHD3Q3KNS1 AL591416.1-201ENST00000404015 867 ntBASIC3.85□□□□□ -1.79
PTCHD3Q3KNS1 RAP1BP3-201ENST00000407180 549 ntBASIC3.85□□□□□ -1.79
PTCHD3Q3KNS1 RNU2-29P-201ENST00000410423 189 ntBASIC3.85□□□□□ -1.79
PTCHD3Q3KNS1 RNU6-387P-201ENST00000411331 105 ntBASIC3.85□□□□□ -1.79
PTCHD3Q3KNS1 CYCSP19-201ENST00000411715 316 ntBASIC3.85□□□□□ -1.79
PTCHD3Q3KNS1 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.85□□□□□ -1.79
PTCHD3Q3KNS1 RAC1P3-201ENST00000416129 580 ntBASIC3.85□□□□□ -1.79
PTCHD3Q3KNS1 RPL21P111-201ENST00000418453 477 ntBASIC3.85□□□□□ -1.79
PTCHD3Q3KNS1 MTATP6P4-201ENST00000427725 675 ntBASIC3.85□□□□□ -1.79
PTCHD3Q3KNS1 AC087650.1-201ENST00000431445 468 ntBASIC3.85□□□□□ -1.79
PTCHD3Q3KNS1 KCTD9P3-201ENST00000434597 1169 ntBASIC3.85□□□□□ -1.79
PTCHD3Q3KNS1 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC3.85□□□□□ -1.79
PTCHD3Q3KNS1 AL121601.2-201ENST00000438019 707 ntBASIC3.85□□□□□ -1.79
PTCHD3Q3KNS1 HMGB1P37-201ENST00000439613 609 ntBASIC3.85□□□□□ -1.79
PTCHD3Q3KNS1 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.85□□□□□ -1.79
PTCHD3Q3KNS1 AC073415.1-201ENST00000449240 153 ntBASIC3.85□□□□□ -1.79
PTCHD3Q3KNS1 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC3.85□□□□□ -1.79
PTCHD3Q3KNS1 HMGB3P30-201ENST00000457863 606 ntBASIC3.85□□□□□ -1.79
PTCHD3Q3KNS1 snoU13.24-201ENST00000458998 104 ntBASIC3.85□□□□□ -1.79
PTCHD3Q3KNS1 RN7SL542P-201ENST00000467147 294 ntBASIC3.85□□□□□ -1.79
PTCHD3Q3KNS1 RPL7L1P8-201ENST00000469911 741 ntBASIC3.85□□□□□ -1.79
PTCHD3Q3KNS1 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC3.85□□□□□ -1.79
PTCHD3Q3KNS1 VN1R104P-201ENST00000505115 1009 ntBASIC3.85□□□□□ -1.79
PTCHD3Q3KNS1 AC018710.1-201ENST00000506509 158 ntBASIC3.85□□□□□ -1.79
PTCHD3Q3KNS1 KLHL2P1-201ENST00000508691 521 ntBASIC3.85□□□□□ -1.79
PTCHD3Q3KNS1 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC3.85□□□□□ -1.79
PTCHD3Q3KNS1 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC3.85□□□□□ -1.79
PTCHD3Q3KNS1 RNU4ATAC8P-201ENST00000516196 109 ntBASIC3.85□□□□□ -1.79
PTCHD3Q3KNS1 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC3.85□□□□□ -1.79
PTCHD3Q3KNS1 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC3.85□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 169.9 ms