Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC073614.1-201ENST00000438690 650 ntBASIC3.5□□□□□ -1.85
COL28A1Q2UY09 MTCO3P45-201ENST00000443036 613 ntBASIC3.5□□□□□ -1.85
COL28A1Q2UY09 AC016696.1-201ENST00000446949 318 ntBASIC3.5□□□□□ -1.85
COL28A1Q2UY09 HMGB3P8-201ENST00000449709 577 ntBASIC3.5□□□□□ -1.85
COL28A1Q2UY09 RGS5-217ENST00000451759 835 ntTSL 3 BASIC3.5□□□□□ -1.85
COL28A1Q2UY09 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC3.5□□□□□ -1.85
COL28A1Q2UY09 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
COL28A1Q2UY09 RPS4XP13-201ENST00000483219 789 ntBASIC3.5□□□□□ -1.85
COL28A1Q2UY09 RPS15AP36-201ENST00000492022 382 ntBASIC3.5□□□□□ -1.85
COL28A1Q2UY09 RPL7P47-201ENST00000497299 556 ntBASIC3.5□□□□□ -1.85
COL28A1Q2UY09 CDC42P4-201ENST00000510507 563 ntBASIC3.5□□□□□ -1.85
COL28A1Q2UY09 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.5□□□□□ -1.85
COL28A1Q2UY09 RNU6-405P-201ENST00000516637 110 ntBASIC3.5□□□□□ -1.85
COL28A1Q2UY09 SNORA18.6-201ENST00000516792 115 ntBASIC3.5□□□□□ -1.85
COL28A1Q2UY09 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC3.5□□□□□ -1.85
COL28A1Q2UY09 APAF1-207ENST00000547743 651 ntTSL 3 BASIC3.5□□□□□ -1.85
COL28A1Q2UY09 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.5□□□□□ -1.85
COL28A1Q2UY09 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC3.5□□□□□ -1.85
COL28A1Q2UY09 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.5□□□□□ -1.85
COL28A1Q2UY09 AC090877.1-201ENST00000561418 344 ntBASIC3.5□□□□□ -1.85
COL28A1Q2UY09 AC137800.2-201ENST00000574375 120 ntBASIC3.5□□□□□ -1.85
COL28A1Q2UY09 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC3.5□□□□□ -1.85
COL28A1Q2UY09 AP001029.3-201ENST00000588063 596 ntBASIC3.5□□□□□ -1.85
COL28A1Q2UY09 AC008277.2-201ENST00000605196 797 ntBASIC3.5□□□□□ -1.85
COL28A1Q2UY09 NDUFA8P1-201ENST00000605525 367 ntBASIC3.5□□□□□ -1.85
COL28A1Q2UY09 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC3.5□□□□□ -1.85
COL28A1Q2UY09 AC090425.2-201ENST00000608818 501 ntBASIC3.5□□□□□ -1.85
COL28A1Q2UY09 AP000254.1-201ENST00000609934 520 ntBASIC3.5□□□□□ -1.85
COL28A1Q2UY09 AL589743.7-201ENST00000612637 233 ntBASIC3.5□□□□□ -1.85
COL28A1Q2UY09 AC048347.1-201ENST00000624621 427 ntBASIC3.5□□□□□ -1.85
COL28A1Q2UY09 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
COL28A1Q2UY09 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
COL28A1Q2UY09 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.5□□□□□ -1.85
COL28A1Q2UY09 GABPAP-201ENST00000419271 1356 ntBASIC3.5□□□□□ -1.85
COL28A1Q2UY09 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.5□□□□□ -1.85
COL28A1Q2UY09 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.49□□□□□ -1.85
COL28A1Q2UY09 AC066616.2-201ENST00000559334 1481 ntBASIC3.49□□□□□ -1.85
COL28A1Q2UY09 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
COL28A1Q2UY09 RNU6-50P-201ENST00000362356 103 ntBASIC3.49□□□□□ -1.85
COL28A1Q2UY09 RNU6-1284P-201ENST00000363701 100 ntBASIC3.49□□□□□ -1.85
COL28A1Q2UY09 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
COL28A1Q2UY09 MIR184-201ENST00000384962 84 ntBASIC3.49□□□□□ -1.85
COL28A1Q2UY09 AC110754.1-201ENST00000399740 601 ntBASIC3.49□□□□□ -1.85
COL28A1Q2UY09 ELOCP17-201ENST00000414751 326 ntBASIC3.49□□□□□ -1.85
COL28A1Q2UY09 UBE2FP1-201ENST00000416536 447 ntBASIC3.49□□□□□ -1.85
COL28A1Q2UY09 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC3.49□□□□□ -1.85
COL28A1Q2UY09 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC3.49□□□□□ -1.85
COL28A1Q2UY09 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC3.49□□□□□ -1.85
COL28A1Q2UY09 USP9YP15-201ENST00000442391 422 ntBASIC3.49□□□□□ -1.85
COL28A1Q2UY09 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.49□□□□□ -1.85
COL28A1Q2UY09 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC3.49□□□□□ -1.85
COL28A1Q2UY09 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC3.49□□□□□ -1.85
COL28A1Q2UY09 HMGN2P16-201ENST00000456802 261 ntBASIC3.49□□□□□ -1.85
COL28A1Q2UY09 TPT1P7-201ENST00000458300 517 ntBASIC3.49□□□□□ -1.85
COL28A1Q2UY09 KLF3P2-201ENST00000465138 268 ntBASIC3.49□□□□□ -1.85
COL28A1Q2UY09 HSPE1P6-201ENST00000479457 291 ntBASIC3.49□□□□□ -1.85
COL28A1Q2UY09 RPL21P13-201ENST00000488305 481 ntBASIC3.49□□□□□ -1.85
COL28A1Q2UY09 AC010587.1-201ENST00000505809 469 ntBASIC3.49□□□□□ -1.85
COL28A1Q2UY09 RNA5SP164-201ENST00000516533 110 ntBASIC3.49□□□□□ -1.85
COL28A1Q2UY09 AC008489.1-201ENST00000524271 483 ntBASIC3.49□□□□□ -1.85
COL28A1Q2UY09 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.49□□□□□ -1.85
COL28A1Q2UY09 AL391156.1-201ENST00000554965 554 ntBASIC3.49□□□□□ -1.85
COL28A1Q2UY09 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC3.49□□□□□ -1.85
COL28A1Q2UY09 ZNF192P1-203ENST00000565888 810 ntBASIC3.49□□□□□ -1.85
COL28A1Q2UY09 AGGF1P4-201ENST00000568249 801 ntBASIC3.49□□□□□ -1.85
COL28A1Q2UY09 AC012213.3-201ENST00000577199 777 ntBASIC3.49□□□□□ -1.85
COL28A1Q2UY09 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC3.49□□□□□ -1.85
COL28A1Q2UY09 MIR4293-201ENST00000584305 78 ntBASIC3.49□□□□□ -1.85
COL28A1Q2UY09 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC3.49□□□□□ -1.85
COL28A1Q2UY09 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.49□□□□□ -1.85
COL28A1Q2UY09 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.49□□□□□ -1.85
COL28A1Q2UY09 AC006023.1-201ENST00000603944 259 ntBASIC3.49□□□□□ -1.85
COL28A1Q2UY09 AC006077.1-201ENST00000604746 343 ntBASIC3.49□□□□□ -1.85
COL28A1Q2UY09 AC103591.3-201ENST00000608684 209 ntBASIC3.49□□□□□ -1.85
COL28A1Q2UY09 AC006566.1-201ENST00000608943 513 ntBASIC3.49□□□□□ -1.85
COL28A1Q2UY09 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC3.49□□□□□ -1.85
COL28A1Q2UY09 AC013476.2-201ENST00000614456 459 ntBASIC3.49□□□□□ -1.85
COL28A1Q2UY09 AC007998.5-201ENST00000622938 237 ntBASIC3.49□□□□□ -1.85
COL28A1Q2UY09 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.49□□□□□ -1.85
COL28A1Q2UY09 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.49□□□□□ -1.85
COL28A1Q2UY09 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.49□□□□□ -1.85
COL28A1Q2UY09 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC3.48□□□□□ -1.85
COL28A1Q2UY09 AL672296.1-201ENST00000427780 2158 ntBASIC3.48□□□□□ -1.85
COL28A1Q2UY09 AC007823.1-201ENST00000569932 1566 ntBASIC3.48□□□□□ -1.85
COL28A1Q2UY09 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.48□□□□□ -1.85
COL28A1Q2UY09 FTLP6-201ENST00000355274 422 ntBASIC3.48□□□□□ -1.85
COL28A1Q2UY09 SNORD9-201ENST00000362566 104 ntBASIC3.48□□□□□ -1.85
COL28A1Q2UY09 RNY4P16-201ENST00000364768 94 ntBASIC3.48□□□□□ -1.85
COL28A1Q2UY09 RNY3P13-201ENST00000365542 102 ntBASIC3.48□□□□□ -1.85
COL28A1Q2UY09 RPA3-203ENST00000401447 414 ntTSL 3 BASIC3.48□□□□□ -1.85
COL28A1Q2UY09 MIR1290-201ENST00000408735 78 ntBASIC3.48□□□□□ -1.85
COL28A1Q2UY09 RNA5SP129-201ENST00000410276 118 ntBASIC3.48□□□□□ -1.85
COL28A1Q2UY09 RNA5SP107-201ENST00000411358 122 ntBASIC3.48□□□□□ -1.85
COL28A1Q2UY09 NAP1L1P2-201ENST00000414182 1089 ntBASIC3.48□□□□□ -1.85
COL28A1Q2UY09 MTCO3P41-201ENST00000414801 328 ntBASIC3.48□□□□□ -1.85
COL28A1Q2UY09 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC3.48□□□□□ -1.85
COL28A1Q2UY09 C1DP2-201ENST00000418167 426 ntBASIC3.48□□□□□ -1.85
COL28A1Q2UY09 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.48□□□□□ -1.85
COL28A1Q2UY09 AC137499.1-201ENST00000427602 88 ntBASIC3.48□□□□□ -1.85
COL28A1Q2UY09 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC3.48□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 144.5 ms