Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC1.86□□□□□ -2.11
FOXF1Q12946 AC012497.1-201ENST00000429392 575 ntBASIC1.86□□□□□ -2.11
FOXF1Q12946 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
FOXF1Q12946 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC1.86□□□□□ -2.11
FOXF1Q12946 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC1.86□□□□□ -2.11
FOXF1Q12946 RPL30P9-201ENST00000465586 330 ntBASIC1.86□□□□□ -2.11
FOXF1Q12946 AC013828.1-201ENST00000481845 158 ntBASIC1.86□□□□□ -2.11
FOXF1Q12946 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
FOXF1Q12946 NAA50-206ENST00000493454 964 ntTSL 2 BASIC1.86□□□□□ -2.11
FOXF1Q12946 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC1.86□□□□□ -2.11
FOXF1Q12946 AC025755.1-201ENST00000521306 278 ntBASIC1.86□□□□□ -2.11
FOXF1Q12946 MTCO1P47-201ENST00000523889 1271 ntBASIC1.86□□□□□ -2.11
FOXF1Q12946 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC1.86□□□□□ -2.11
FOXF1Q12946 AC087894.1-201ENST00000538359 518 ntBASIC1.86□□□□□ -2.11
FOXF1Q12946 AC044913.1-201ENST00000557200 430 ntBASIC1.86□□□□□ -2.11
FOXF1Q12946 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
FOXF1Q12946 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC1.86□□□□□ -2.11
FOXF1Q12946 MIR4448-201ENST00000584360 86 ntBASIC1.86□□□□□ -2.11
FOXF1Q12946 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC1.86□□□□□ -2.11
FOXF1Q12946 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC1.86□□□□□ -2.11
FOXF1Q12946 MIR6840-201ENST00000611937 71 ntBASIC1.86□□□□□ -2.11
FOXF1Q12946 Y_RNA.783-201ENST00000613546 102 ntBASIC1.86□□□□□ -2.11
FOXF1Q12946 AL450472.3-201ENST00000615578 367 ntBASIC1.86□□□□□ -2.11
FOXF1Q12946 AC253576.2-201ENST00000618815 580 ntBASIC1.86□□□□□ -2.11
FOXF1Q12946 AC068880.5-201ENST00000624331 290 ntBASIC1.86□□□□□ -2.11
FOXF1Q12946 MKKS-204ENST00000639674 192 ntBASIC1.86□□□□□ -2.11
FOXF1Q12946 TPTE2P4-201ENST00000258589 1605 ntBASIC1.86□□□□□ -2.11
FOXF1Q12946 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
FOXF1Q12946 ATP8A2P3-201ENST00000426792 1536 ntBASIC1.86□□□□□ -2.11
FOXF1Q12946 AC009487.4-201ENST00000624969 3585 ntBASIC1.85□□□□□ -2.11
FOXF1Q12946 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC1.85□□□□□ -2.11
FOXF1Q12946 AC008568.2-201ENST00000623862 2313 ntBASIC1.85□□□□□ -2.11
FOXF1Q12946 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
FOXF1Q12946 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
FOXF1Q12946 RNU6-707P-201ENST00000364647 95 ntBASIC1.85□□□□□ -2.11
FOXF1Q12946 RNA5SP160-201ENST00000364866 120 ntBASIC1.85□□□□□ -2.11
FOXF1Q12946 RNA5SP37-201ENST00000365420 130 ntBASIC1.85□□□□□ -2.11
FOXF1Q12946 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
FOXF1Q12946 TAS2R15P-201ENST00000390674 928 ntBASIC1.85□□□□□ -2.11
FOXF1Q12946 AL035405.1-201ENST00000400795 710 ntBASIC1.85□□□□□ -2.11
FOXF1Q12946 MTCO1P56-201ENST00000401674 224 ntBASIC1.85□□□□□ -2.11
FOXF1Q12946 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC1.85□□□□□ -2.11
FOXF1Q12946 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC1.85□□□□□ -2.11
FOXF1Q12946 DPRXP1-201ENST00000426312 460 ntBASIC1.85□□□□□ -2.11
FOXF1Q12946 AC013262.1-201ENST00000426710 252 ntBASIC1.85□□□□□ -2.11
FOXF1Q12946 PTGES3P1-201ENST00000439531 483 ntBASIC1.85□□□□□ -2.11
FOXF1Q12946 USP9YP8-201ENST00000441913 500 ntBASIC1.85□□□□□ -2.11
FOXF1Q12946 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC1.85□□□□□ -2.11
FOXF1Q12946 MTCYBP11-201ENST00000447254 1109 ntBASIC1.85□□□□□ -2.11
FOXF1Q12946 COX6CP18-201ENST00000448769 222 ntBASIC1.85□□□□□ -2.11
FOXF1Q12946 RPL23AP7-203ENST00000449021 469 ntBASIC1.85□□□□□ -2.11
FOXF1Q12946 SNRPGP6-201ENST00000451124 220 ntBASIC1.85□□□□□ -2.11
FOXF1Q12946 AL021397.1-201ENST00000451806 248 ntBASIC1.85□□□□□ -2.11
FOXF1Q12946 RFC5P1-201ENST00000454419 874 ntBASIC1.85□□□□□ -2.11
FOXF1Q12946 Z82190.1-201ENST00000454534 490 ntBASIC1.85□□□□□ -2.11
FOXF1Q12946 AC010099.1-201ENST00000455434 375 ntBASIC1.85□□□□□ -2.11
FOXF1Q12946 SUMO2P2-201ENST00000456482 255 ntBASIC1.85□□□□□ -2.11
FOXF1Q12946 PNPLA4P1-201ENST00000458328 305 ntBASIC1.85□□□□□ -2.11
FOXF1Q12946 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC1.85□□□□□ -2.11
FOXF1Q12946 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC1.85□□□□□ -2.11
FOXF1Q12946 RPS29P21-201ENST00000496272 170 ntBASIC1.85□□□□□ -2.11
FOXF1Q12946 AC008837.1-201ENST00000511513 412 ntBASIC1.85□□□□□ -2.11
FOXF1Q12946 RAC1P5-201ENST00000512182 576 ntBASIC1.85□□□□□ -2.11
FOXF1Q12946 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC1.85□□□□□ -2.11
FOXF1Q12946 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC1.85□□□□□ -2.11
FOXF1Q12946 HSPA8P13-201ENST00000523715 472 ntBASIC1.85□□□□□ -2.11
FOXF1Q12946 AC104417.1-201ENST00000523974 751 ntBASIC1.85□□□□□ -2.11
FOXF1Q12946 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
FOXF1Q12946 AP003066.2-201ENST00000529375 555 ntBASIC1.85□□□□□ -2.11
FOXF1Q12946 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC1.85□□□□□ -2.11
FOXF1Q12946 AC068339.2-201ENST00000534395 618 ntBASIC1.85□□□□□ -2.11
FOXF1Q12946 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC1.85□□□□□ -2.11
FOXF1Q12946 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
FOXF1Q12946 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
FOXF1Q12946 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC1.85□□□□□ -2.11
FOXF1Q12946 AC090502.2-201ENST00000549267 280 ntBASIC1.85□□□□□ -2.11
FOXF1Q12946 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
FOXF1Q12946 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC1.85□□□□□ -2.11
FOXF1Q12946 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC1.85□□□□□ -2.11
FOXF1Q12946 MIR3921-201ENST00000577308 85 ntBASIC1.85□□□□□ -2.11
FOXF1Q12946 MIR4648-201ENST00000580107 72 ntBASIC1.85□□□□□ -2.11
FOXF1Q12946 AC126365.2-201ENST00000580630 379 ntBASIC1.85□□□□□ -2.11
FOXF1Q12946 VN1R78P-201ENST00000597393 564 ntBASIC1.85□□□□□ -2.11
FOXF1Q12946 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC1.85□□□□□ -2.11
FOXF1Q12946 AL035411.2-201ENST00000604022 421 ntBASIC1.85□□□□□ -2.11
FOXF1Q12946 AC103710.1-201ENST00000610003 901 ntBASIC1.85□□□□□ -2.11
FOXF1Q12946 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC1.85□□□□□ -2.11
FOXF1Q12946 AC027309.3-201ENST00000623419 351 ntBASIC1.85□□□□□ -2.11
FOXF1Q12946 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC1.85□□□□□ -2.11
FOXF1Q12946 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC1.85□□□□□ -2.11
FOXF1Q12946 MIR219B-201ENST00000637023 88 ntBASIC1.85□□□□□ -2.11
FOXF1Q12946 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC1.85□□□□□ -2.11
FOXF1Q12946 MTND4P35-201ENST00000604257 1375 ntBASIC1.85□□□□□ -2.11
FOXF1Q12946 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC1.84□□□□□ -2.11
FOXF1Q12946 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC1.84□□□□□ -2.11
FOXF1Q12946 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC1.84□□□□□ -2.11
FOXF1Q12946 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
FOXF1Q12946 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC1.84□□□□□ -2.11
FOXF1Q12946 DEFB108F-201ENST00000344638 222 ntBASIC1.84□□□□□ -2.11
FOXF1Q12946 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC1.84□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 95.2 ms