Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 ZNF736P1Y-201ENST00000440402 1276 ntBASIC2.48□□□□□ -2.01
RFX3P48380 BMI1P1-201ENST00000445879 941 ntBASIC2.48□□□□□ -2.01
RFX3P48380 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC2.48□□□□□ -2.01
RFX3P48380 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC2.48□□□□□ -2.01
RFX3P48380 MTND2P24-201ENST00000453434 806 ntBASIC2.48□□□□□ -2.01
RFX3P48380 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC2.48□□□□□ -2.01
RFX3P48380 BX322784.1-201ENST00000455793 1077 ntBASIC2.48□□□□□ -2.01
RFX3P48380 SNORD121B-201ENST00000458838 81 ntBASIC2.48□□□□□ -2.01
RFX3P48380 RPL30P9-201ENST00000465586 330 ntBASIC2.48□□□□□ -2.01
RFX3P48380 MTND4LP3-201ENST00000468320 276 ntBASIC2.48□□□□□ -2.01
RFX3P48380 RPL31P50-201ENST00000471002 296 ntBASIC2.48□□□□□ -2.01
RFX3P48380 WDR78-207ENST00000488333 613 ntTSL 3 BASIC2.48□□□□□ -2.01
RFX3P48380 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC2.48□□□□□ -2.01
RFX3P48380 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC2.48□□□□□ -2.01
RFX3P48380 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC2.48□□□□□ -2.01
RFX3P48380 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC2.48□□□□□ -2.01
RFX3P48380 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC2.48□□□□□ -2.01
RFX3P48380 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.48□□□□□ -2.01
RFX3P48380 RNY4P37-201ENST00000516225 96 ntBASIC2.48□□□□□ -2.01
RFX3P48380 HMGB1P41-201ENST00000520234 440 ntBASIC2.48□□□□□ -2.01
RFX3P48380 AC100870.1-201ENST00000522035 505 ntBASIC2.48□□□□□ -2.01
RFX3P48380 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC2.48□□□□□ -2.01
RFX3P48380 DEFB131D-201ENST00000526803 184 ntBASIC2.48□□□□□ -2.01
RFX3P48380 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
RFX3P48380 GTF3AP2-201ENST00000557014 266 ntBASIC2.48□□□□□ -2.01
RFX3P48380 MTCYBP23-201ENST00000558717 1102 ntBASIC2.48□□□□□ -2.01
RFX3P48380 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.48□□□□□ -2.01
RFX3P48380 AC005951.2-201ENST00000576282 495 ntBASIC2.48□□□□□ -2.01
RFX3P48380 ELOCP29-201ENST00000588193 334 ntBASIC2.48□□□□□ -2.01
RFX3P48380 AC004852.3-201ENST00000614131 326 ntBASIC2.48□□□□□ -2.01
RFX3P48380 HOTTIP_4.1-201ENST00000618195 165 ntBASIC2.48□□□□□ -2.01
RFX3P48380 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC2.48□□□□□ -2.01
RFX3P48380 AC099654.9-201ENST00000637055 678 ntBASIC2.48□□□□□ -2.01
RFX3P48380 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.48□□□□□ -2.01
RFX3P48380 DDX43P2-201ENST00000604753 1354 ntBASIC2.48□□□□□ -2.01
RFX3P48380 SDAD1P2-201ENST00000441308 2028 ntBASIC2.47□□□□□ -2.01
RFX3P48380 RNU1-105P-201ENST00000363470 161 ntBASIC2.47□□□□□ -2.01
RFX3P48380 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
RFX3P48380 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
RFX3P48380 AC092047.1-201ENST00000424997 240 ntBASIC2.47□□□□□ -2.01
RFX3P48380 AC008850.1-201ENST00000427546 362 ntBASIC2.47□□□□□ -2.01
RFX3P48380 BNIP3P2-201ENST00000441221 577 ntBASIC2.47□□□□□ -2.01
RFX3P48380 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC2.47□□□□□ -2.01
RFX3P48380 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC2.47□□□□□ -2.01
RFX3P48380 MTND1P16-201ENST00000465177 898 ntBASIC2.47□□□□□ -2.01
RFX3P48380 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC2.47□□□□□ -2.01
RFX3P48380 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC2.47□□□□□ -2.01
RFX3P48380 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.47□□□□□ -2.01
RFX3P48380 MTND3P3-201ENST00000505004 126 ntBASIC2.47□□□□□ -2.01
RFX3P48380 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.47□□□□□ -2.01
RFX3P48380 RN7SKP132-201ENST00000516001 208 ntBASIC2.47□□□□□ -2.01
RFX3P48380 RNU6-714P-201ENST00000516963 103 ntBASIC2.47□□□□□ -2.01
RFX3P48380 RN7SKP40-201ENST00000517211 242 ntBASIC2.47□□□□□ -2.01
RFX3P48380 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC2.47□□□□□ -2.01
RFX3P48380 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC2.47□□□□□ -2.01
RFX3P48380 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC2.47□□□□□ -2.01
RFX3P48380 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC2.47□□□□□ -2.01
RFX3P48380 GLYCAM1-201ENST00000546596 285 ntBASIC2.47□□□□□ -2.01
RFX3P48380 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
RFX3P48380 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC2.47□□□□□ -2.01
RFX3P48380 MIR4509-3-201ENST00000578671 94 ntBASIC2.47□□□□□ -2.01
RFX3P48380 AC103810.1-201ENST00000579873 453 ntBASIC2.47□□□□□ -2.01
RFX3P48380 MIR4509-2-201ENST00000583920 94 ntBASIC2.47□□□□□ -2.01
RFX3P48380 AL353997.4-201ENST00000586196 166 ntBASIC2.47□□□□□ -2.01
RFX3P48380 OR1M4P-201ENST00000589199 287 ntBASIC2.47□□□□□ -2.01
RFX3P48380 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.47□□□□□ -2.01
RFX3P48380 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC2.47□□□□□ -2.01
RFX3P48380 AL136363.1-201ENST00000605349 337 ntBASIC2.47□□□□□ -2.01
RFX3P48380 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC2.47□□□□□ -2.01
RFX3P48380 AL121652.1-201ENST00000608851 448 ntBASIC2.47□□□□□ -2.01
RFX3P48380 UBE2Q2P6-201ENST00000612666 153 ntBASIC2.47□□□□□ -2.01
RFX3P48380 AC093838.1-201ENST00000613014 469 ntBASIC2.47□□□□□ -2.01
RFX3P48380 AC140725.3-201ENST00000616193 880 ntBASIC2.47□□□□□ -2.01
RFX3P48380 MIR4509-1-201ENST00000618224 94 ntBASIC2.47□□□□□ -2.01
RFX3P48380 AC022306.3-201ENST00000619930 550 ntBASIC2.47□□□□□ -2.01
RFX3P48380 AC010297.1-201ENST00000623948 149 ntBASIC2.47□□□□□ -2.01
RFX3P48380 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC2.47□□□□□ -2.01
RFX3P48380 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.47□□□□□ -2.01
RFX3P48380 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.47□□□□□ -2.01
RFX3P48380 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.47□□□□□ -2.01
RFX3P48380 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.47□□□□□ -2.01
RFX3P48380 CR848007.1-201ENST00000442354 1699 ntBASIC2.47□□□□□ -2.01
RFX3P48380 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
RFX3P48380 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
RFX3P48380 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.46□□□□□ -2.02
RFX3P48380 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.46□□□□□ -2.02
RFX3P48380 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.46□□□□□ -2.02
RFX3P48380 AL161781.1-201ENST00000354277 403 ntBASIC2.46□□□□□ -2.02
RFX3P48380 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC2.46□□□□□ -2.02
RFX3P48380 AL356057.3-201ENST00000402607 340 ntBASIC2.46□□□□□ -2.02
RFX3P48380 RNU2-52P-201ENST00000410680 190 ntBASIC2.46□□□□□ -2.02
RFX3P48380 RNA5SP21-201ENST00000410917 96 ntBASIC2.46□□□□□ -2.02
RFX3P48380 RNU2-25P-201ENST00000411041 191 ntBASIC2.46□□□□□ -2.02
RFX3P48380 HMGN2P35-201ENST00000412164 270 ntBASIC2.46□□□□□ -2.02
RFX3P48380 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC2.46□□□□□ -2.02
RFX3P48380 ARL5AP4-201ENST00000430731 512 ntBASIC2.46□□□□□ -2.02
RFX3P48380 GTF2IP20-201ENST00000431663 360 ntBASIC2.46□□□□□ -2.02
RFX3P48380 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.46□□□□□ -2.02
RFX3P48380 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC2.46□□□□□ -2.02
RFX3P48380 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC2.46□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 129.4 ms