Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 RNU6-362P-201ENST00000516736 90 ntBASIC2.19□□□□□ -2.06
COL18A1P39060 RNU6-711P-201ENST00000517255 106 ntBASIC2.19□□□□□ -2.06
COL18A1P39060 PTK2-220ENST00000520151 573 ntTSL 4 BASIC2.19□□□□□ -2.06
COL18A1P39060 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC2.19□□□□□ -2.06
COL18A1P39060 AC239860.2-201ENST00000525886 270 ntBASIC2.19□□□□□ -2.06
COL18A1P39060 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC2.19□□□□□ -2.06
COL18A1P39060 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC2.19□□□□□ -2.06
COL18A1P39060 MAGOH2P-202ENST00000584384 429 ntBASIC2.19□□□□□ -2.06
COL18A1P39060 AC020658.4-201ENST00000613987 684 ntBASIC2.19□□□□□ -2.06
COL18A1P39060 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC2.19□□□□□ -2.06
COL18A1P39060 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC2.19□□□□□ -2.06
COL18A1P39060 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC2.19□□□□□ -2.06
COL18A1P39060 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC2.19□□□□□ -2.06
COL18A1P39060 MTND5P7-201ENST00000413558 1798 ntBASIC2.19□□□□□ -2.06
COL18A1P39060 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC2.19□□□□□ -2.06
COL18A1P39060 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC2.19□□□□□ -2.06
COL18A1P39060 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.19□□□□□ -2.06
COL18A1P39060 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.18□□□□□ -2.06
COL18A1P39060 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.18□□□□□ -2.06
COL18A1P39060 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.18□□□□□ -2.06
COL18A1P39060 MTND4P13-201ENST00000402078 1023 ntBASIC2.18□□□□□ -2.06
COL18A1P39060 TMSB4XP8-201ENST00000402089 135 ntBASIC2.18□□□□□ -2.06
COL18A1P39060 TMSB4XP6-201ENST00000415187 135 ntBASIC2.18□□□□□ -2.06
COL18A1P39060 RPL21P32-201ENST00000419877 477 ntBASIC2.18□□□□□ -2.06
COL18A1P39060 TMSB4XP1-201ENST00000424567 135 ntBASIC2.18□□□□□ -2.06
COL18A1P39060 RPL7P37-201ENST00000425095 738 ntBASIC2.18□□□□□ -2.06
COL18A1P39060 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC2.18□□□□□ -2.06
COL18A1P39060 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC2.18□□□□□ -2.06
COL18A1P39060 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC2.18□□□□□ -2.06
COL18A1P39060 AC080013.2-201ENST00000460866 323 ntBASIC2.18□□□□□ -2.06
COL18A1P39060 HESX1-202ENST00000473921 757 ntTSL 5 BASIC2.18□□□□□ -2.06
COL18A1P39060 AC109464.2-201ENST00000510242 943 ntBASIC2.18□□□□□ -2.06
COL18A1P39060 SNORA31.8-201ENST00000516327 108 ntBASIC2.18□□□□□ -2.06
COL18A1P39060 AC087441.2-201ENST00000529141 262 ntBASIC2.18□□□□□ -2.06
COL18A1P39060 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC2.18□□□□□ -2.06
COL18A1P39060 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC2.18□□□□□ -2.06
COL18A1P39060 AL355810.1-201ENST00000614629 552 ntBASIC2.18□□□□□ -2.06
COL18A1P39060 AC003001.2-201ENST00000616294 831 ntBASIC2.18□□□□□ -2.06
COL18A1P39060 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
COL18A1P39060 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
COL18A1P39060 AL589826.1-201ENST00000340697 249 ntBASIC2.18□□□□□ -2.06
COL18A1P39060 TAS2R15P-201ENST00000390674 928 ntBASIC2.18□□□□□ -2.06
COL18A1P39060 AL121978.1-201ENST00000402778 359 ntBASIC2.18□□□□□ -2.06
COL18A1P39060 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC2.18□□□□□ -2.06
COL18A1P39060 AL133384.1-201ENST00000412744 351 ntBASIC2.18□□□□□ -2.06
COL18A1P39060 TRIM60P5Y-201ENST00000413946 574 ntBASIC2.18□□□□□ -2.06
COL18A1P39060 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC2.18□□□□□ -2.06
COL18A1P39060 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC2.18□□□□□ -2.06
COL18A1P39060 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC2.18□□□□□ -2.06
COL18A1P39060 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
COL18A1P39060 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC2.18□□□□□ -2.06
COL18A1P39060 AC092436.3-201ENST00000511788 257 ntBASIC2.18□□□□□ -2.06
COL18A1P39060 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC2.18□□□□□ -2.06
COL18A1P39060 PRELID3BP4-201ENST00000515476 571 ntBASIC2.18□□□□□ -2.06
COL18A1P39060 RNU6-416P-201ENST00000516265 103 ntBASIC2.18□□□□□ -2.06
COL18A1P39060 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC2.18□□□□□ -2.06
COL18A1P39060 XIAPP1-201ENST00000603162 600 ntBASIC2.18□□□□□ -2.06
COL18A1P39060 RMST_6.1-201ENST00000611980 203 ntBASIC2.18□□□□□ -2.06
COL18A1P39060 AC068831.7-201ENST00000616954 363 ntBASIC2.18□□□□□ -2.06
COL18A1P39060 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.18□□□□□ -2.06
COL18A1P39060 AP003122.6-201ENST00000623831 495 ntBASIC2.18□□□□□ -2.06
COL18A1P39060 MTND2P41-201ENST00000637599 773 ntBASIC2.18□□□□□ -2.06
COL18A1P39060 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
COL18A1P39060 ZNF876P-202ENST00000398732 1485 ntBASIC2.17□□□□□ -2.06
COL18A1P39060 MTND5P35-201ENST00000557537 1720 ntBASIC2.17□□□□□ -2.06
COL18A1P39060 AC233981.2-201ENST00000611524 1614 ntBASIC2.17□□□□□ -2.06
COL18A1P39060 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC2.17□□□□□ -2.06
COL18A1P39060 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC2.17□□□□□ -2.06
COL18A1P39060 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
COL18A1P39060 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
COL18A1P39060 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
COL18A1P39060 SNORA26.7-201ENST00000391288 122 ntBASIC2.17□□□□□ -2.06
COL18A1P39060 MCTS2P-201ENST00000394552 546 ntBASIC2.17□□□□□ -2.06
COL18A1P39060 AL035405.1-201ENST00000400795 710 ntBASIC2.17□□□□□ -2.06
COL18A1P39060 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC2.17□□□□□ -2.06
COL18A1P39060 RNU6-1077P-201ENST00000410506 102 ntBASIC2.17□□□□□ -2.06
COL18A1P39060 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC2.17□□□□□ -2.06
COL18A1P39060 WARS2P1-201ENST00000429678 537 ntBASIC2.17□□□□□ -2.06
COL18A1P39060 AC069528.1-202ENST00000482888 637 ntBASIC2.17□□□□□ -2.06
COL18A1P39060 SNORA31.15-201ENST00000516771 132 ntBASIC2.17□□□□□ -2.06
COL18A1P39060 CD69-203ENST00000536709 1020 ntTSL 2 BASIC2.17□□□□□ -2.06
COL18A1P39060 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC2.17□□□□□ -2.06
COL18A1P39060 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC2.17□□□□□ -2.06
COL18A1P39060 SNORD84-203ENST00000584275 78 ntBASIC2.17□□□□□ -2.06
COL18A1P39060 AC079791.1-201ENST00000605356 973 ntBASIC2.17□□□□□ -2.06
COL18A1P39060 AC090116.1-201ENST00000615679 446 ntBASIC2.17□□□□□ -2.06
COL18A1P39060 AC073968.1-201ENST00000618594 637 ntBASIC2.17□□□□□ -2.06
COL18A1P39060 AC006213.5-201ENST00000619673 288 ntBASIC2.17□□□□□ -2.06
COL18A1P39060 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC2.17□□□□□ -2.06
COL18A1P39060 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
COL18A1P39060 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
COL18A1P39060 RNU6-730P-201ENST00000383954 104 ntBASIC2.16□□□□□ -2.06
COL18A1P39060 RNU6-339P-201ENST00000384310 107 ntBASIC2.16□□□□□ -2.06
COL18A1P39060 POLHP1-201ENST00000411806 470 ntBASIC2.16□□□□□ -2.06
COL18A1P39060 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.16□□□□□ -2.06
COL18A1P39060 FO393414.1-201ENST00000428697 1184 ntBASIC2.16□□□□□ -2.06
COL18A1P39060 MTCO3P43-201ENST00000440974 771 ntBASIC2.16□□□□□ -2.06
COL18A1P39060 RPS20P24-201ENST00000457473 361 ntBASIC2.16□□□□□ -2.06
COL18A1P39060 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
COL18A1P39060 C1GALT1P2-201ENST00000510813 1104 ntBASIC2.16□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 139.5 ms