Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 RNU6-549P-201ENST00000384433 107 ntBASIC2.34□□□□□ -2.03
SCN4AP35499 DSTNP4-201ENST00000399472 474 ntBASIC2.34□□□□□ -2.03
SCN4AP35499 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC2.34□□□□□ -2.03
SCN4AP35499 AC099677.1-201ENST00000420575 175 ntBASIC2.34□□□□□ -2.03
SCN4AP35499 RPL7P30-201ENST00000420888 709 ntBASIC2.34□□□□□ -2.03
SCN4AP35499 MTCO2P20-201ENST00000437339 673 ntBASIC2.34□□□□□ -2.03
SCN4AP35499 USP9YP8-201ENST00000441913 500 ntBASIC2.34□□□□□ -2.03
SCN4AP35499 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC2.34□□□□□ -2.03
SCN4AP35499 AC092902.1-201ENST00000486999 259 ntBASIC2.34□□□□□ -2.03
SCN4AP35499 HMGB1P38-201ENST00000490557 577 ntBASIC2.34□□□□□ -2.03
SCN4AP35499 AC016550.1-201ENST00000505348 785 ntBASIC2.34□□□□□ -2.03
SCN4AP35499 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC2.34□□□□□ -2.03
SCN4AP35499 RNA5SP468-201ENST00000516782 93 ntBASIC2.34□□□□□ -2.03
SCN4AP35499 RNA5SP490-201ENST00000517141 136 ntBASIC2.34□□□□□ -2.03
SCN4AP35499 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC2.34□□□□□ -2.03
SCN4AP35499 RPS3AP4-201ENST00000555161 764 ntBASIC2.34□□□□□ -2.03
SCN4AP35499 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC2.34□□□□□ -2.03
SCN4AP35499 AC023824.3-201ENST00000569003 562 ntBASIC2.34□□□□□ -2.03
SCN4AP35499 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC2.34□□□□□ -2.03
SCN4AP35499 AL589994.2-201ENST00000621124 579 ntBASIC2.34□□□□□ -2.03
SCN4AP35499 AP003485.1-201ENST00000625093 753 ntBASIC2.34□□□□□ -2.03
SCN4AP35499 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC2.34□□□□□ -2.03
SCN4AP35499 FO624990.1-201ENST00000636373 85 ntBASIC2.34□□□□□ -2.03
SCN4AP35499 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.34□□□□□ -2.04
SCN4AP35499 DBF4P1-201ENST00000412976 1892 ntBASIC2.34□□□□□ -2.04
SCN4AP35499 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.34□□□□□ -2.04
SCN4AP35499 AP001350.1-201ENST00000601906 1524 ntBASIC2.34□□□□□ -2.04
SCN4AP35499 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.33□□□□□ -2.04
SCN4AP35499 HMGB1P5-201ENST00000255320 642 ntBASIC2.33□□□□□ -2.04
SCN4AP35499 RNU1-109P-201ENST00000383960 147 ntBASIC2.33□□□□□ -2.04
SCN4AP35499 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC2.33□□□□□ -2.04
SCN4AP35499 FCF1P2-201ENST00000415284 583 ntBASIC2.33□□□□□ -2.04
SCN4AP35499 MTND4P3-201ENST00000417829 541 ntBASIC2.33□□□□□ -2.04
SCN4AP35499 AC027644.1-201ENST00000419595 298 ntBASIC2.33□□□□□ -2.04
SCN4AP35499 SDR42E1P3-201ENST00000438345 502 ntBASIC2.33□□□□□ -2.04
SCN4AP35499 ARF4P4-201ENST00000439608 520 ntBASIC2.33□□□□□ -2.04
SCN4AP35499 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC2.33□□□□□ -2.04
SCN4AP35499 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC2.33□□□□□ -2.04
SCN4AP35499 AC104073.1-201ENST00000451988 151 ntBASIC2.33□□□□□ -2.04
SCN4AP35499 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC2.33□□□□□ -2.04
SCN4AP35499 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
SCN4AP35499 AC006390.1-201ENST00000508068 283 ntBASIC2.33□□□□□ -2.04
SCN4AP35499 RNU4ATAC10P-201ENST00000516967 122 ntBASIC2.33□□□□□ -2.04
SCN4AP35499 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC2.33□□□□□ -2.04
SCN4AP35499 AC010546.1-201ENST00000569391 485 ntBASIC2.33□□□□□ -2.04
SCN4AP35499 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC2.33□□□□□ -2.04
SCN4AP35499 AC020895.1-201ENST00000595362 272 ntBASIC2.33□□□□□ -2.04
SCN4AP35499 AC068790.3-201ENST00000602988 553 ntBASIC2.33□□□□□ -2.04
SCN4AP35499 AP005137.2-201ENST00000609238 400 ntBASIC2.33□□□□□ -2.04
SCN4AP35499 AL110115.1-201ENST00000614396 364 ntBASIC2.33□□□□□ -2.04
SCN4AP35499 AC084768.2-201ENST00000622736 221 ntBASIC2.33□□□□□ -2.04
SCN4AP35499 U6.101-201ENST00000637707 76 ntBASIC2.33□□□□□ -2.04
SCN4AP35499 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC2.33□□□□□ -2.04
SCN4AP35499 AC027514.1-201ENST00000588561 1603 ntBASIC2.33□□□□□ -2.04
SCN4AP35499 RNA5SP37-201ENST00000365420 130 ntBASIC2.33□□□□□ -2.04
SCN4AP35499 RNU6-1000P-201ENST00000391066 106 ntBASIC2.33□□□□□ -2.04
SCN4AP35499 AC073264.1-201ENST00000411508 416 ntBASIC2.33□□□□□ -2.04
SCN4AP35499 CKS1BP5-201ENST00000434172 273 ntBASIC2.33□□□□□ -2.04
SCN4AP35499 RNF2P1-201ENST00000442955 1010 ntBASIC2.33□□□□□ -2.04
SCN4AP35499 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.33□□□□□ -2.04
SCN4AP35499 AC079776.3-201ENST00000450665 370 ntBASIC2.33□□□□□ -2.04
SCN4AP35499 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC2.33□□□□□ -2.04
SCN4AP35499 AC110792.2-201ENST00000510278 224 ntBASIC2.33□□□□□ -2.04
SCN4AP35499 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC2.33□□□□□ -2.04
SCN4AP35499 SNORA25.15-201ENST00000516487 89 ntBASIC2.33□□□□□ -2.04
SCN4AP35499 SCARNA1-201ENST00000517138 166 ntBASIC2.33□□□□□ -2.04
SCN4AP35499 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC2.33□□□□□ -2.04
SCN4AP35499 ARL2BPP5-201ENST00000523141 481 ntBASIC2.33□□□□□ -2.04
SCN4AP35499 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC2.33□□□□□ -2.04
SCN4AP35499 ISCA1P3-201ENST00000577104 373 ntBASIC2.33□□□□□ -2.04
SCN4AP35499 AC010738.1-201ENST00000604970 987 ntBASIC2.33□□□□□ -2.04
SCN4AP35499 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC2.33□□□□□ -2.04
SCN4AP35499 AC090897.3-201ENST00000636973 1157 ntBASIC2.33□□□□□ -2.04
SCN4AP35499 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
SCN4AP35499 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.32□□□□□ -2.04
SCN4AP35499 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.32□□□□□ -2.04
SCN4AP35499 Y_RNA.122-201ENST00000363331 96 ntBASIC2.32□□□□□ -2.04
SCN4AP35499 AL603865.2-201ENST00000401679 213 ntBASIC2.32□□□□□ -2.04
SCN4AP35499 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC2.32□□□□□ -2.04
SCN4AP35499 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC2.32□□□□□ -2.04
SCN4AP35499 COX6CP18-201ENST00000448769 222 ntBASIC2.32□□□□□ -2.04
SCN4AP35499 snoU13.3-201ENST00000459441 104 ntBASIC2.32□□□□□ -2.04
SCN4AP35499 AC091860.1-201ENST00000505723 432 ntBASIC2.32□□□□□ -2.04
SCN4AP35499 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC2.32□□□□□ -2.04
SCN4AP35499 EEF1B2P4-201ENST00000551398 348 ntBASIC2.32□□□□□ -2.04
SCN4AP35499 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
SCN4AP35499 MIR4504-201ENST00000577413 92 ntBASIC2.32□□□□□ -2.04
SCN4AP35499 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC2.32□□□□□ -2.04
SCN4AP35499 BNIP3P31-201ENST00000604515 566 ntBASIC2.32□□□□□ -2.04
SCN4AP35499 AC073387.2-201ENST00000604797 784 ntBASIC2.32□□□□□ -2.04
SCN4AP35499 AC104763.3-201ENST00000613765 618 ntBASIC2.32□□□□□ -2.04
SCN4AP35499 AL049777.1-201ENST00000622740 518 ntBASIC2.32□□□□□ -2.04
SCN4AP35499 AC111188.2-201ENST00000529697 1387 ntBASIC2.32□□□□□ -2.04
SCN4AP35499 MTND5P3-201ENST00000438536 1800 ntBASIC2.32□□□□□ -2.04
SCN4AP35499 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
SCN4AP35499 AC026241.1-201ENST00000517873 2142 ntBASIC2.31□□□□□ -2.04
SCN4AP35499 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.31□□□□□ -2.04
SCN4AP35499 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
SCN4AP35499 RNU6-707P-201ENST00000364647 95 ntBASIC2.31□□□□□ -2.04
SCN4AP35499 CUBN-201ENST00000377823 705 ntTSL 3 BASIC2.31□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 127.1 ms