Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RNU6-612P-201ENST00000516909 102 ntBASIC5.1□□□□□ -1.59
MSX1P28360 RAB9BP1-201ENST00000519581 626 ntBASIC5.1□□□□□ -1.59
MSX1P28360 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
MSX1P28360 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC5.1□□□□□ -1.59
MSX1P28360 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC5.1□□□□□ -1.59
MSX1P28360 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC5.1□□□□□ -1.59
MSX1P28360 MIR4659A-201ENST00000580269 81 ntBASIC5.1□□□□□ -1.59
MSX1P28360 FKBP1AP1-201ENST00000594588 318 ntBASIC5.1□□□□□ -1.59
MSX1P28360 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC5.1□□□□□ -1.59
MSX1P28360 RPL23AP78-201ENST00000599928 470 ntBASIC5.1□□□□□ -1.59
MSX1P28360 AL162424.1-201ENST00000602325 221 ntBASIC5.1□□□□□ -1.59
MSX1P28360 MIR6837-201ENST00000620884 64 ntBASIC5.1□□□□□ -1.59
MSX1P28360 AL365265.1-201ENST00000621045 234 ntBASIC5.1□□□□□ -1.59
MSX1P28360 AC073869.8-201ENST00000641806 335 ntBASIC5.1□□□□□ -1.59
MSX1P28360 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC5.1□□□□□ -1.59
MSX1P28360 RALGAPA1P1-201ENST00000443361 6232 ntBASIC5.1□□□□□ -1.59
MSX1P28360 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
MSX1P28360 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
MSX1P28360 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
MSX1P28360 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
MSX1P28360 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC5.1□□□□□ -1.59
MSX1P28360 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
MSX1P28360 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
MSX1P28360 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
MSX1P28360 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC5.09□□□□□ -1.59
MSX1P28360 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC5.09□□□□□ -1.59
MSX1P28360 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
MSX1P28360 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC5.09□□□□□ -1.59
MSX1P28360 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
MSX1P28360 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
MSX1P28360 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC5.09□□□□□ -1.59
MSX1P28360 AL360270.2-201ENST00000562952 5985 ntBASIC5.09□□□□□ -1.59
MSX1P28360 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
MSX1P28360 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC5.09□□□□□ -1.59
MSX1P28360 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
MSX1P28360 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC5.09□□□□□ -1.59
MSX1P28360 Y_RNA.33-201ENST00000362591 102 ntBASIC5.09□□□□□ -1.59
MSX1P28360 RNU6-384P-201ENST00000364900 104 ntBASIC5.09□□□□□ -1.59
MSX1P28360 RNU6-326P-201ENST00000365480 107 ntBASIC5.09□□□□□ -1.59
MSX1P28360 Y_RNA.383-201ENST00000383855 97 ntBASIC5.09□□□□□ -1.59
MSX1P28360 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
MSX1P28360 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC5.09□□□□□ -1.59
MSX1P28360 AL133173.1-201ENST00000423458 397 ntBASIC5.09□□□□□ -1.59
MSX1P28360 HMGN2P27-201ENST00000427352 270 ntBASIC5.09□□□□□ -1.59
MSX1P28360 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC5.09□□□□□ -1.59
MSX1P28360 AL450023.1-201ENST00000450868 751 ntBASIC5.09□□□□□ -1.59
MSX1P28360 AL356981.1-201ENST00000454879 684 ntBASIC5.09□□□□□ -1.59
MSX1P28360 RPL23AP81-201ENST00000455252 467 ntBASIC5.09□□□□□ -1.59
MSX1P28360 AC034236.1-201ENST00000469891 373 ntBASIC5.09□□□□□ -1.59
MSX1P28360 AC100832.1-201ENST00000471945 383 ntBASIC5.09□□□□□ -1.59
MSX1P28360 RN7SL583P-201ENST00000475692 287 ntBASIC5.09□□□□□ -1.59
MSX1P28360 RN7SL30P-201ENST00000488416 306 ntBASIC5.09□□□□□ -1.59
MSX1P28360 AC231760.1-201ENST00000498002 260 ntBASIC5.09□□□□□ -1.59
MSX1P28360 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC5.09□□□□□ -1.59
MSX1P28360 AC136777.2-201ENST00000522979 358 ntBASIC5.09□□□□□ -1.59
MSX1P28360 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC5.09□□□□□ -1.59
MSX1P28360 EDDM3DP-201ENST00000554692 434 ntBASIC5.09□□□□□ -1.59
MSX1P28360 AC103996.1-201ENST00000555468 102 ntBASIC5.09□□□□□ -1.59
MSX1P28360 MRPS21P7-201ENST00000566937 238 ntBASIC5.09□□□□□ -1.59
MSX1P28360 AL078605.1-201ENST00000603529 500 ntBASIC5.09□□□□□ -1.59
MSX1P28360 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC5.09□□□□□ -1.59
MSX1P28360 AC025574.2-201ENST00000615621 514 ntBASIC5.09□□□□□ -1.59
MSX1P28360 MIR7155-201ENST00000615925 56 ntBASIC5.09□□□□□ -1.59
MSX1P28360 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC5.09□□□□□ -1.59
MSX1P28360 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
MSX1P28360 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
MSX1P28360 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
MSX1P28360 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
MSX1P28360 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC5.09□□□□□ -1.59
MSX1P28360 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
MSX1P28360 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC5.09□□□□□ -1.6
MSX1P28360 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
MSX1P28360 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
MSX1P28360 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
MSX1P28360 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.09□□□□□ -1.6
MSX1P28360 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC5.08□□□□□ -1.6
MSX1P28360 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.08□□□□□ -1.6
MSX1P28360 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
MSX1P28360 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC5.08□□□□□ -1.6
MSX1P28360 SAGE2P-201ENST00000420011 2126 ntBASIC5.08□□□□□ -1.6
MSX1P28360 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
MSX1P28360 RNA5SP326-201ENST00000363209 110 ntBASIC5.08□□□□□ -1.6
MSX1P28360 Y_RNA.233-201ENST00000364407 101 ntBASIC5.08□□□□□ -1.6
MSX1P28360 Y_RNA.504-201ENST00000384481 104 ntBASIC5.08□□□□□ -1.6
MSX1P28360 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
MSX1P28360 RNU6-394P-201ENST00000410735 107 ntBASIC5.08□□□□□ -1.6
MSX1P28360 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC5.08□□□□□ -1.6
MSX1P28360 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC5.08□□□□□ -1.6
MSX1P28360 AL117339.3-201ENST00000418733 162 ntBASIC5.08□□□□□ -1.6
MSX1P28360 AC007161.1-204ENST00000423039 460 ntBASIC5.08□□□□□ -1.6
MSX1P28360 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC5.08□□□□□ -1.6
MSX1P28360 AC093414.1-201ENST00000434712 514 ntBASIC5.08□□□□□ -1.6
MSX1P28360 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC5.08□□□□□ -1.6
MSX1P28360 AC087588.1-201ENST00000462203 316 ntBASIC5.08□□□□□ -1.6
MSX1P28360 RPL37P6-202ENST00000464216 403 ntBASIC5.08□□□□□ -1.6
MSX1P28360 RPL23AP45-201ENST00000476406 468 ntBASIC5.08□□□□□ -1.6
MSX1P28360 AC007686.1-201ENST00000488511 463 ntBASIC5.08□□□□□ -1.6
MSX1P28360 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC5.08□□□□□ -1.6
MSX1P28360 MRPS18CP4-201ENST00000535821 231 ntBASIC5.08□□□□□ -1.6
MSX1P28360 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC5.08□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms