Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC5.55□□□□□ -1.52
RFX1P22670 RPL23AP31-201ENST00000456160 467 ntBASIC5.55□□□□□ -1.52
RFX1P22670 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC5.55□□□□□ -1.52
RFX1P22670 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC5.55□□□□□ -1.52
RFX1P22670 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC5.55□□□□□ -1.52
RFX1P22670 RNU6-120P-201ENST00000516077 103 ntBASIC5.55□□□□□ -1.52
RFX1P22670 SNORD116.3-201ENST00000517176 78 ntBASIC5.55□□□□□ -1.52
RFX1P22670 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
RFX1P22670 AC084851.1-201ENST00000529105 249 ntBASIC5.55□□□□□ -1.52
RFX1P22670 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC5.55□□□□□ -1.52
RFX1P22670 TRAV37-201ENST00000553906 342 ntBASIC5.55□□□□□ -1.52
RFX1P22670 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC5.55□□□□□ -1.52
RFX1P22670 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
RFX1P22670 7SK.7-201ENST00000603504 247 ntBASIC5.55□□□□□ -1.52
RFX1P22670 AP005432.2-201ENST00000608162 586 ntBASIC5.55□□□□□ -1.52
RFX1P22670 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC5.55□□□□□ -1.52
RFX1P22670 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC5.55□□□□□ -1.52
RFX1P22670 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
RFX1P22670 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
RFX1P22670 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
RFX1P22670 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC5.55□□□□□ -1.52
RFX1P22670 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
RFX1P22670 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
RFX1P22670 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
RFX1P22670 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC5.54□□□□□ -1.52
RFX1P22670 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
RFX1P22670 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
RFX1P22670 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
RFX1P22670 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
RFX1P22670 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC5.54□□□□□ -1.52
RFX1P22670 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
RFX1P22670 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC5.54□□□□□ -1.52
RFX1P22670 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC5.54□□□□□ -1.52
RFX1P22670 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
RFX1P22670 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC5.54□□□□□ -1.52
RFX1P22670 Y_RNA.151-201ENST00000363566 112 ntBASIC5.54□□□□□ -1.52
RFX1P22670 RNU6-842P-201ENST00000384269 107 ntBASIC5.54□□□□□ -1.52
RFX1P22670 RNU6-1179P-201ENST00000384667 107 ntBASIC5.54□□□□□ -1.52
RFX1P22670 U3.32-201ENST00000408116 212 ntBASIC5.54□□□□□ -1.52
RFX1P22670 RNU6-55P-201ENST00000411092 107 ntBASIC5.54□□□□□ -1.52
RFX1P22670 HMGB3P2-201ENST00000411913 584 ntBASIC5.54□□□□□ -1.52
RFX1P22670 COX6B1P1-201ENST00000415962 213 ntBASIC5.54□□□□□ -1.52
RFX1P22670 SYF2P2-201ENST00000417620 583 ntBASIC5.54□□□□□ -1.52
RFX1P22670 AC243428.1-201ENST00000421099 264 ntBASIC5.54□□□□□ -1.52
RFX1P22670 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC5.54□□□□□ -1.52
RFX1P22670 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC5.54□□□□□ -1.52
RFX1P22670 AC091390.3-201ENST00000426478 338 ntBASIC5.54□□□□□ -1.52
RFX1P22670 AC091390.1-201ENST00000433904 331 ntBASIC5.54□□□□□ -1.52
RFX1P22670 RPL35AP21-201ENST00000437667 333 ntBASIC5.54□□□□□ -1.52
RFX1P22670 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC5.54□□□□□ -1.52
RFX1P22670 RANP8-201ENST00000444720 713 ntBASIC5.54□□□□□ -1.52
RFX1P22670 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC5.54□□□□□ -1.52
RFX1P22670 FTH1P25-201ENST00000447665 469 ntBASIC5.54□□□□□ -1.52
RFX1P22670 RPS29P33-201ENST00000456717 146 ntBASIC5.54□□□□□ -1.52
RFX1P22670 AC128713.1-201ENST00000471495 306 ntBASIC5.54□□□□□ -1.52
RFX1P22670 AC073073.1-201ENST00000493920 463 ntBASIC5.54□□□□□ -1.52
RFX1P22670 AC008897.1-201ENST00000494006 347 ntBASIC5.54□□□□□ -1.52
RFX1P22670 MIR892C-201ENST00000516410 77 ntBASIC5.54□□□□□ -1.52
RFX1P22670 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC5.54□□□□□ -1.52
RFX1P22670 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC5.54□□□□□ -1.52
RFX1P22670 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC5.54□□□□□ -1.52
RFX1P22670 GNAI2P1-201ENST00000541815 315 ntBASIC5.54□□□□□ -1.52
RFX1P22670 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC5.54□□□□□ -1.52
RFX1P22670 OR8R1P-201ENST00000543943 764 ntBASIC5.54□□□□□ -1.52
RFX1P22670 AC084783.1-201ENST00000565846 910 ntBASIC5.54□□□□□ -1.52
RFX1P22670 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC5.54□□□□□ -1.52
RFX1P22670 AC073869.10-201ENST00000642016 354 ntBASIC5.54□□□□□ -1.52
RFX1P22670 INTS6P1-201ENST00000504674 2530 ntBASIC5.54□□□□□ -1.52
RFX1P22670 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC5.54□□□□□ -1.52
RFX1P22670 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
RFX1P22670 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
RFX1P22670 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
RFX1P22670 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC5.54□□□□□ -1.52
RFX1P22670 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC5.54□□□□□ -1.52
RFX1P22670 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
RFX1P22670 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC5.53□□□□□ -1.52
RFX1P22670 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
RFX1P22670 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC5.53□□□□□ -1.52
RFX1P22670 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
RFX1P22670 U3.15-201ENST00000365398 212 ntBASIC5.53□□□□□ -1.52
RFX1P22670 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
RFX1P22670 MIR517A-201ENST00000385001 87 ntBASIC5.53□□□□□ -1.52
RFX1P22670 MIR600-201ENST00000385007 98 ntBASIC5.53□□□□□ -1.52
RFX1P22670 Z85995.1-201ENST00000415547 335 ntBASIC5.53□□□□□ -1.52
RFX1P22670 EIF4EP1-201ENST00000422311 642 ntBASIC5.53□□□□□ -1.52
RFX1P22670 RPL27AP8-201ENST00000424277 446 ntBASIC5.53□□□□□ -1.52
RFX1P22670 HMGN2P21-201ENST00000447764 270 ntBASIC5.53□□□□□ -1.52
RFX1P22670 NDUFB1P2-201ENST00000449477 176 ntBASIC5.53□□□□□ -1.52
RFX1P22670 FABP5P15-201ENST00000453566 214 ntBASIC5.53□□□□□ -1.52
RFX1P22670 PCMTD1P1-201ENST00000455560 355 ntBASIC5.53□□□□□ -1.52
RFX1P22670 RN7SL385P-201ENST00000468873 276 ntBASIC5.53□□□□□ -1.52
RFX1P22670 BX284632.1-201ENST00000478218 541 ntBASIC5.53□□□□□ -1.52
RFX1P22670 AC011005.2-201ENST00000487324 359 ntBASIC5.53□□□□□ -1.52
RFX1P22670 AL160314.1-201ENST00000490836 438 ntBASIC5.53□□□□□ -1.52
RFX1P22670 RNU6-264P-201ENST00000517134 104 ntBASIC5.53□□□□□ -1.52
RFX1P22670 IGKV2D-23-201ENST00000518179 286 ntBASIC5.53□□□□□ -1.52
RFX1P22670 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC5.53□□□□□ -1.52
RFX1P22670 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC5.53□□□□□ -1.52
RFX1P22670 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC5.53□□□□□ -1.52
RFX1P22670 NDUFB4P11-201ENST00000560510 395 ntBASIC5.53□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms