Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 SLC10A5P1-201ENST00000379063 1306 ntBASIC2.28□□□□□ -2.04
USF1P22415 AL512633.1-201ENST00000399931 655 ntBASIC2.28□□□□□ -2.04
USF1P22415 AL590004.2-201ENST00000404787 371 ntBASIC2.28□□□□□ -2.04
USF1P22415 TPMTP3-201ENST00000411928 735 ntBASIC2.28□□□□□ -2.04
USF1P22415 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC2.28□□□□□ -2.04
USF1P22415 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.28□□□□□ -2.04
USF1P22415 AC099548.1-201ENST00000421443 426 ntBASIC2.28□□□□□ -2.04
USF1P22415 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.28□□□□□ -2.04
USF1P22415 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC2.28□□□□□ -2.04
USF1P22415 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC2.28□□□□□ -2.04
USF1P22415 AL513043.1-201ENST00000439124 535 ntBASIC2.28□□□□□ -2.04
USF1P22415 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC2.28□□□□□ -2.04
USF1P22415 BX322784.1-201ENST00000455793 1077 ntBASIC2.28□□□□□ -2.04
USF1P22415 RPL9P33-201ENST00000484311 566 ntBASIC2.28□□□□□ -2.04
USF1P22415 FAM172BP-201ENST00000487497 1089 ntBASIC2.28□□□□□ -2.04
USF1P22415 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC2.28□□□□□ -2.04
USF1P22415 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC2.28□□□□□ -2.04
USF1P22415 OR5BM1P-201ENST00000512021 366 ntBASIC2.28□□□□□ -2.04
USF1P22415 AC010376.1-201ENST00000522101 334 ntBASIC2.28□□□□□ -2.04
USF1P22415 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC2.28□□□□□ -2.04
USF1P22415 AP001646.1-201ENST00000527936 915 ntBASIC2.28□□□□□ -2.04
USF1P22415 AP002748.2-201ENST00000528671 348 ntBASIC2.28□□□□□ -2.04
USF1P22415 AC118942.1-201ENST00000529674 1035 ntBASIC2.28□□□□□ -2.04
USF1P22415 AP000857.1-201ENST00000532151 543 ntBASIC2.28□□□□□ -2.04
USF1P22415 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
USF1P22415 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC2.28□□□□□ -2.04
USF1P22415 CASC16-202ENST00000563844 610 ntTSL 3 BASIC2.28□□□□□ -2.04
USF1P22415 AC234778.2-201ENST00000566241 354 ntBASIC2.28□□□□□ -2.04
USF1P22415 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC2.28□□□□□ -2.04
USF1P22415 MTND3P13-201ENST00000574391 343 ntBASIC2.28□□□□□ -2.04
USF1P22415 BBIP1P1-201ENST00000602999 279 ntBASIC2.28□□□□□ -2.04
USF1P22415 DUXAP3-201ENST00000603616 594 ntBASIC2.28□□□□□ -2.04
USF1P22415 MIR6817-201ENST00000615588 66 ntBASIC2.28□□□□□ -2.04
USF1P22415 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC2.28□□□□□ -2.04
USF1P22415 VPS8-228ENST00000628962 207 ntTSL 5 BASIC2.28□□□□□ -2.04
USF1P22415 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC2.28□□□□□ -2.04
USF1P22415 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.28□□□□□ -2.04
USF1P22415 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.28□□□□□ -2.05
USF1P22415 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC2.27□□□□□ -2.05
USF1P22415 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC2.27□□□□□ -2.05
USF1P22415 AL390862.1-201ENST00000635467 1469 ntBASIC2.27□□□□□ -2.05
USF1P22415 AC092593.1-201ENST00000515413 1815 ntBASIC2.27□□□□□ -2.05
USF1P22415 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
USF1P22415 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
USF1P22415 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC2.27□□□□□ -2.05
USF1P22415 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
USF1P22415 AL161781.1-201ENST00000354277 403 ntBASIC2.27□□□□□ -2.05
USF1P22415 RNA5SP68-201ENST00000363885 119 ntBASIC2.27□□□□□ -2.05
USF1P22415 RNU6-1078P-201ENST00000364522 103 ntBASIC2.27□□□□□ -2.05
USF1P22415 RNU6-343P-201ENST00000364709 104 ntBASIC2.27□□□□□ -2.05
USF1P22415 MIR181A2-201ENST00000384863 110 ntBASIC2.27□□□□□ -2.05
USF1P22415 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC2.27□□□□□ -2.05
USF1P22415 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC2.27□□□□□ -2.05
USF1P22415 AC009414.1-201ENST00000427200 443 ntBASIC2.27□□□□□ -2.05
USF1P22415 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC2.27□□□□□ -2.05
USF1P22415 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC2.27□□□□□ -2.05
USF1P22415 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.27□□□□□ -2.05
USF1P22415 RPL36AP6-201ENST00000435770 321 ntBASIC2.27□□□□□ -2.05
USF1P22415 AC002381.1-201ENST00000447049 280 ntBASIC2.27□□□□□ -2.05
USF1P22415 MTND1P9-201ENST00000453775 944 ntBASIC2.27□□□□□ -2.05
USF1P22415 AC092155.2-201ENST00000454675 477 ntBASIC2.27□□□□□ -2.05
USF1P22415 AC087588.1-201ENST00000462203 316 ntBASIC2.27□□□□□ -2.05
USF1P22415 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC2.27□□□□□ -2.05
USF1P22415 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.27□□□□□ -2.05
USF1P22415 MEPE-206ENST00000511670 550 ntTSL 4 BASIC2.27□□□□□ -2.05
USF1P22415 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.27□□□□□ -2.05
USF1P22415 RPPH1-2P-201ENST00000516688 293 ntBASIC2.27□□□□□ -2.05
USF1P22415 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC2.27□□□□□ -2.05
USF1P22415 OR6C7P-201ENST00000547875 934 ntBASIC2.27□□□□□ -2.05
USF1P22415 AC091544.4-201ENST00000555268 342 ntBASIC2.27□□□□□ -2.05
USF1P22415 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC2.27□□□□□ -2.05
USF1P22415 AL353997.4-201ENST00000586196 166 ntBASIC2.27□□□□□ -2.05
USF1P22415 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC2.27□□□□□ -2.05
USF1P22415 AC021749.1-201ENST00000604322 607 ntBASIC2.27□□□□□ -2.05
USF1P22415 AC013476.2-201ENST00000614456 459 ntBASIC2.27□□□□□ -2.05
USF1P22415 MIR6715A-201ENST00000615929 79 ntBASIC2.27□□□□□ -2.05
USF1P22415 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC2.27□□□□□ -2.05
USF1P22415 AL355493.4-201ENST00000618530 292 ntBASIC2.27□□□□□ -2.05
USF1P22415 AL603758.1-201ENST00000618654 241 ntBASIC2.27□□□□□ -2.05
USF1P22415 UCA1.1-201ENST00000620952 75 ntBASIC2.27□□□□□ -2.05
USF1P22415 AC243829.7-201ENST00000633081 225 ntBASIC2.27□□□□□ -2.05
USF1P22415 AP003399.1-201ENST00000637534 361 ntBASIC2.27□□□□□ -2.05
USF1P22415 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
USF1P22415 ELF2P3-201ENST00000445099 1506 ntBASIC2.27□□□□□ -2.05
USF1P22415 RNU6-97P-201ENST00000363387 104 ntBASIC2.26□□□□□ -2.05
USF1P22415 U3.12-201ENST00000364498 214 ntBASIC2.26□□□□□ -2.05
USF1P22415 RNU6-637P-201ENST00000384050 107 ntBASIC2.26□□□□□ -2.05
USF1P22415 MIR627-201ENST00000384979 97 ntBASIC2.26□□□□□ -2.05
USF1P22415 MIR767-201ENST00000390228 109 ntBASIC2.26□□□□□ -2.05
USF1P22415 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.26□□□□□ -2.05
USF1P22415 RNU6-1000P-201ENST00000391066 106 ntBASIC2.26□□□□□ -2.05
USF1P22415 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC2.26□□□□□ -2.05
USF1P22415 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC2.26□□□□□ -2.05
USF1P22415 AC092047.1-201ENST00000424997 240 ntBASIC2.26□□□□□ -2.05
USF1P22415 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC2.26□□□□□ -2.05
USF1P22415 Z82210.1-201ENST00000440037 231 ntBASIC2.26□□□□□ -2.05
USF1P22415 BNIP3P2-201ENST00000441221 577 ntBASIC2.26□□□□□ -2.05
USF1P22415 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC2.26□□□□□ -2.05
USF1P22415 MTCYBP3-201ENST00000445588 1137 ntBASIC2.26□□□□□ -2.05
USF1P22415 CBWD4P-201ENST00000445695 655 ntBASIC2.26□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 86.8 ms