Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 SPA17P1-201ENST00000416656 452 ntBASIC3.29□□□□□ -1.88
MSH3P20585 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC3.29□□□□□ -1.88
MSH3P20585 RPL21P66-201ENST00000426566 466 ntBASIC3.29□□□□□ -1.88
MSH3P20585 AL589872.1-201ENST00000426602 288 ntBASIC3.29□□□□□ -1.88
MSH3P20585 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC3.29□□□□□ -1.88
MSH3P20585 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC3.29□□□□□ -1.88
MSH3P20585 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC3.29□□□□□ -1.88
MSH3P20585 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC3.29□□□□□ -1.88
MSH3P20585 MTND1P9-201ENST00000453775 944 ntBASIC3.29□□□□□ -1.88
MSH3P20585 AC008155.2-201ENST00000464337 397 ntBASIC3.29□□□□□ -1.88
MSH3P20585 RPL7P49-201ENST00000471402 708 ntBASIC3.29□□□□□ -1.88
MSH3P20585 RPL23AP41-201ENST00000484754 458 ntBASIC3.29□□□□□ -1.88
MSH3P20585 AC138853.1-201ENST00000503549 823 ntBASIC3.29□□□□□ -1.88
MSH3P20585 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC3.29□□□□□ -1.88
MSH3P20585 HMGB3P15-201ENST00000507326 574 ntBASIC3.29□□□□□ -1.88
MSH3P20585 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.29□□□□□ -1.88
MSH3P20585 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC3.29□□□□□ -1.88
MSH3P20585 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC3.29□□□□□ -1.88
MSH3P20585 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.29□□□□□ -1.88
MSH3P20585 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.29□□□□□ -1.88
MSH3P20585 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC3.29□□□□□ -1.88
MSH3P20585 AC009063.1-201ENST00000563342 702 ntBASIC3.29□□□□□ -1.88
MSH3P20585 AL356432.3-201ENST00000568952 465 ntBASIC3.29□□□□□ -1.88
MSH3P20585 AC012182.1-201ENST00000570133 895 ntBASIC3.29□□□□□ -1.88
MSH3P20585 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC3.29□□□□□ -1.88
MSH3P20585 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC3.29□□□□□ -1.88
MSH3P20585 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC3.29□□□□□ -1.88
MSH3P20585 AL031176.1-201ENST00000604554 466 ntBASIC3.29□□□□□ -1.88
MSH3P20585 AL391813.2-201ENST00000609113 322 ntBASIC3.29□□□□□ -1.88
MSH3P20585 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC3.29□□□□□ -1.88
MSH3P20585 AC013476.2-201ENST00000614456 459 ntBASIC3.29□□□□□ -1.88
MSH3P20585 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.29□□□□□ -1.88
MSH3P20585 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC3.29□□□□□ -1.88
MSH3P20585 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.29□□□□□ -1.88
MSH3P20585 AC007256.1-201ENST00000392253 2765 ntBASIC3.29□□□□□ -1.88
MSH3P20585 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
MSH3P20585 FARSBP1-201ENST00000435808 1778 ntBASIC3.28□□□□□ -1.88
MSH3P20585 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
MSH3P20585 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.28□□□□□ -1.88
MSH3P20585 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
MSH3P20585 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
MSH3P20585 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.28□□□□□ -1.88
MSH3P20585 AF274854.1-201ENST00000413236 615 ntBASIC3.28□□□□□ -1.88
MSH3P20585 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC3.28□□□□□ -1.88
MSH3P20585 AC104651.1-201ENST00000427559 735 ntBASIC3.28□□□□□ -1.88
MSH3P20585 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.28□□□□□ -1.88
MSH3P20585 HMGB1P12-201ENST00000438594 598 ntBASIC3.28□□□□□ -1.88
MSH3P20585 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC3.28□□□□□ -1.88
MSH3P20585 AC125238.1-201ENST00000448842 249 ntBASIC3.28□□□□□ -1.88
MSH3P20585 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC3.28□□□□□ -1.88
MSH3P20585 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC3.28□□□□□ -1.88
MSH3P20585 RPS4XP13-201ENST00000483219 789 ntBASIC3.28□□□□□ -1.88
MSH3P20585 RPL32P34-201ENST00000486380 400 ntBASIC3.28□□□□□ -1.88
MSH3P20585 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC3.28□□□□□ -1.88
MSH3P20585 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.28□□□□□ -1.88
MSH3P20585 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC3.28□□□□□ -1.88
MSH3P20585 Y_RNA.672-201ENST00000516289 104 ntBASIC3.28□□□□□ -1.88
MSH3P20585 SNORA64.4-201ENST00000516632 81 ntBASIC3.28□□□□□ -1.88
MSH3P20585 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC3.28□□□□□ -1.88
MSH3P20585 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC3.28□□□□□ -1.88
MSH3P20585 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC3.28□□□□□ -1.88
MSH3P20585 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
MSH3P20585 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC3.28□□□□□ -1.88
MSH3P20585 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.28□□□□□ -1.88
MSH3P20585 AC126177.3-201ENST00000551839 688 ntBASIC3.28□□□□□ -1.88
MSH3P20585 AL121603.1-201ENST00000553815 142 ntBASIC3.28□□□□□ -1.88
MSH3P20585 AC005476.1-201ENST00000554427 397 ntBASIC3.28□□□□□ -1.88
MSH3P20585 AC245505.1-201ENST00000556398 224 ntBASIC3.28□□□□□ -1.88
MSH3P20585 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC3.28□□□□□ -1.88
MSH3P20585 AC087481.2-201ENST00000565492 330 ntBASIC3.28□□□□□ -1.88
MSH3P20585 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.28□□□□□ -1.88
MSH3P20585 MIR3944-201ENST00000581277 108 ntBASIC3.28□□□□□ -1.88
MSH3P20585 MIR3682-201ENST00000581338 84 ntBASIC3.28□□□□□ -1.88
MSH3P20585 MIR3118-1-201ENST00000581787 76 ntBASIC3.28□□□□□ -1.88
MSH3P20585 AC068790.3-201ENST00000602988 553 ntBASIC3.28□□□□□ -1.88
MSH3P20585 AC024220.1-201ENST00000603675 484 ntBASIC3.28□□□□□ -1.88
MSH3P20585 AL161729.4-201ENST00000604650 476 ntBASIC3.28□□□□□ -1.88
MSH3P20585 AC069200.1-201ENST00000609511 323 ntBASIC3.28□□□□□ -1.88
MSH3P20585 AC103710.1-201ENST00000610003 901 ntBASIC3.28□□□□□ -1.88
MSH3P20585 BX664608.1-201ENST00000610519 487 ntBASIC3.28□□□□□ -1.88
MSH3P20585 uc_338.1-201ENST00000612113 180 ntBASIC3.28□□□□□ -1.88
MSH3P20585 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
MSH3P20585 SNORD39.4-201ENST00000620099 78 ntBASIC3.28□□□□□ -1.88
MSH3P20585 AC095031.1-201ENST00000623685 672 ntBASIC3.28□□□□□ -1.88
MSH3P20585 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC3.28□□□□□ -1.88
MSH3P20585 AL672296.1-201ENST00000427780 2158 ntBASIC3.28□□□□□ -1.88
MSH3P20585 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.28□□□□□ -1.89
MSH3P20585 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.28□□□□□ -1.89
MSH3P20585 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.27□□□□□ -1.89
MSH3P20585 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
MSH3P20585 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
MSH3P20585 AC118273.1-201ENST00000525324 3006 ntBASIC3.27□□□□□ -1.89
MSH3P20585 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
MSH3P20585 AC004925.1-201ENST00000624256 2706 ntBASIC3.27□□□□□ -1.89
MSH3P20585 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC3.27□□□□□ -1.89
MSH3P20585 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
MSH3P20585 GNG5P1-201ENST00000255500 204 ntBASIC3.27□□□□□ -1.89
MSH3P20585 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.27□□□□□ -1.89
MSH3P20585 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
MSH3P20585 RNY4P34-201ENST00000364779 95 ntBASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 137.3 ms