Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC2.97□□□□□ -1.93
HOXD4P09016 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC2.97□□□□□ -1.93
HOXD4P09016 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC2.97□□□□□ -1.93
HOXD4P09016 AC116347.2-201ENST00000514912 523 ntBASIC2.97□□□□□ -1.93
HOXD4P09016 FABP5P5-201ENST00000515537 406 ntBASIC2.97□□□□□ -1.93
HOXD4P09016 RNA5SP468-201ENST00000516782 93 ntBASIC2.97□□□□□ -1.93
HOXD4P09016 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC2.97□□□□□ -1.93
HOXD4P09016 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
HOXD4P09016 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC2.97□□□□□ -1.93
HOXD4P09016 AP002963.1-201ENST00000530590 184 ntBASIC2.97□□□□□ -1.93
HOXD4P09016 SYF2P1-201ENST00000550658 413 ntBASIC2.97□□□□□ -1.93
HOXD4P09016 SARNP-203ENST00000552080 726 ntTSL 2 BASIC2.97□□□□□ -1.93
HOXD4P09016 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC2.97□□□□□ -1.93
HOXD4P09016 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC2.97□□□□□ -1.93
HOXD4P09016 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC2.97□□□□□ -1.93
HOXD4P09016 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC2.97□□□□□ -1.93
HOXD4P09016 AL451007.1-201ENST00000595491 289 ntBASIC2.97□□□□□ -1.93
HOXD4P09016 AL139286.2-201ENST00000606838 396 ntBASIC2.97□□□□□ -1.93
HOXD4P09016 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC2.97□□□□□ -1.93
HOXD4P09016 AC104010.1-201ENST00000616889 150 ntBASIC2.97□□□□□ -1.93
HOXD4P09016 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC2.97□□□□□ -1.93
HOXD4P09016 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC2.97□□□□□ -1.93
HOXD4P09016 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
HOXD4P09016 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.96□□□□□ -1.93
HOXD4P09016 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.96□□□□□ -1.94
HOXD4P09016 AL049780.3-201ENST00000624612 1583 ntBASIC2.96□□□□□ -1.94
HOXD4P09016 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
HOXD4P09016 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
HOXD4P09016 SNORA51.4-201ENST00000364993 124 ntBASIC2.96□□□□□ -1.94
HOXD4P09016 RNU5E-5P-201ENST00000365379 116 ntBASIC2.96□□□□□ -1.94
HOXD4P09016 RNU6-809P-201ENST00000384461 107 ntBASIC2.96□□□□□ -1.94
HOXD4P09016 SNORA26.7-201ENST00000391288 122 ntBASIC2.96□□□□□ -1.94
HOXD4P09016 MIR1289-1-201ENST00000408836 144 ntBASIC2.96□□□□□ -1.94
HOXD4P09016 MTCO1P17-201ENST00000411522 491 ntBASIC2.96□□□□□ -1.94
HOXD4P09016 Z99755.1-201ENST00000414048 380 ntBASIC2.96□□□□□ -1.94
HOXD4P09016 CDK8P2-201ENST00000415020 547 ntBASIC2.96□□□□□ -1.94
HOXD4P09016 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC2.96□□□□□ -1.94
HOXD4P09016 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC2.96□□□□□ -1.94
HOXD4P09016 AC109583.1-201ENST00000432156 268 ntBASIC2.96□□□□□ -1.94
HOXD4P09016 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC2.96□□□□□ -1.94
HOXD4P09016 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC2.96□□□□□ -1.94
HOXD4P09016 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC2.96□□□□□ -1.94
HOXD4P09016 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC2.96□□□□□ -1.94
HOXD4P09016 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC2.96□□□□□ -1.94
HOXD4P09016 SDCBPP1-201ENST00000440192 890 ntBASIC2.96□□□□□ -1.94
HOXD4P09016 IGKV1OR-3-201ENST00000446944 348 ntBASIC2.96□□□□□ -1.94
HOXD4P09016 ELOCP23-201ENST00000452014 332 ntBASIC2.96□□□□□ -1.94
HOXD4P09016 AL445669.2-201ENST00000454425 421 ntBASIC2.96□□□□□ -1.94
HOXD4P09016 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC2.96□□□□□ -1.94
HOXD4P09016 UBE2DNL-203ENST00000474922 222 ntBASIC2.96□□□□□ -1.94
HOXD4P09016 AC023424.2-201ENST00000493479 777 ntBASIC2.96□□□□□ -1.94
HOXD4P09016 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
HOXD4P09016 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC2.96□□□□□ -1.94
HOXD4P09016 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC2.96□□□□□ -1.94
HOXD4P09016 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC2.96□□□□□ -1.94
HOXD4P09016 RPL23AP94-201ENST00000512518 302 ntBASIC2.96□□□□□ -1.94
HOXD4P09016 RNA5SP341-201ENST00000516261 117 ntBASIC2.96□□□□□ -1.94
HOXD4P09016 AC107934.2-201ENST00000518653 310 ntBASIC2.96□□□□□ -1.94
HOXD4P09016 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC2.96□□□□□ -1.94
HOXD4P09016 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC2.96□□□□□ -1.94
HOXD4P09016 MAL2-203ENST00000534619 578 ntTSL 4 BASIC2.96□□□□□ -1.94
HOXD4P09016 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC2.96□□□□□ -1.94
HOXD4P09016 EEF1B2P4-201ENST00000551398 348 ntBASIC2.96□□□□□ -1.94
HOXD4P09016 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC2.96□□□□□ -1.94
HOXD4P09016 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC2.96□□□□□ -1.94
HOXD4P09016 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC2.96□□□□□ -1.94
HOXD4P09016 AL157394.1-201ENST00000562983 1224 ntBASIC2.96□□□□□ -1.94
HOXD4P09016 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC2.96□□□□□ -1.94
HOXD4P09016 MIR5697-201ENST00000578045 78 ntBASIC2.96□□□□□ -1.94
HOXD4P09016 AC006504.3-201ENST00000586818 523 ntBASIC2.96□□□□□ -1.94
HOXD4P09016 AC068790.2-201ENST00000602601 557 ntBASIC2.96□□□□□ -1.94
HOXD4P09016 AL627309.6-201ENST00000606857 840 ntBASIC2.96□□□□□ -1.94
HOXD4P09016 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
HOXD4P09016 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC2.96□□□□□ -1.94
HOXD4P09016 AC100793.4-201ENST00000613683 429 ntBASIC2.96□□□□□ -1.94
HOXD4P09016 CRYM-AS1-204ENST00000637983 556 ntBASIC2.96□□□□□ -1.94
HOXD4P09016 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.96□□□□□ -1.94
HOXD4P09016 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC2.96□□□□□ -1.94
HOXD4P09016 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.96□□□□□ -1.94
HOXD4P09016 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
HOXD4P09016 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC2.95□□□□□ -1.94
HOXD4P09016 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC2.95□□□□□ -1.94
HOXD4P09016 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
HOXD4P09016 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC2.95□□□□□ -1.94
HOXD4P09016 RNU6-50P-201ENST00000362356 103 ntBASIC2.95□□□□□ -1.94
HOXD4P09016 RNU6-1119P-201ENST00000384349 108 ntBASIC2.95□□□□□ -1.94
HOXD4P09016 AL357075.1-201ENST00000404107 726 ntBASIC2.95□□□□□ -1.94
HOXD4P09016 RNU2-15P-201ENST00000410692 191 ntBASIC2.95□□□□□ -1.94
HOXD4P09016 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC2.95□□□□□ -1.94
HOXD4P09016 MTCO3P41-201ENST00000414801 328 ntBASIC2.95□□□□□ -1.94
HOXD4P09016 AL139281.1-201ENST00000422120 335 ntBASIC2.95□□□□□ -1.94
HOXD4P09016 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC2.95□□□□□ -1.94
HOXD4P09016 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC2.95□□□□□ -1.94
HOXD4P09016 AL356583.2-201ENST00000426536 280 ntBASIC2.95□□□□□ -1.94
HOXD4P09016 RPS24P1-201ENST00000438550 371 ntBASIC2.95□□□□□ -1.94
HOXD4P09016 ATP5C1P1-201ENST00000441945 895 ntBASIC2.95□□□□□ -1.94
HOXD4P09016 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC2.95□□□□□ -1.94
HOXD4P09016 HMGB1P15-201ENST00000453854 435 ntBASIC2.95□□□□□ -1.94
HOXD4P09016 MTCO1P42-201ENST00000457379 726 ntBASIC2.95□□□□□ -1.94
HOXD4P09016 snoU13.4-201ENST00000458916 104 ntBASIC2.95□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms