Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 DDX18P3-201ENST00000404856 2007 ntBASIC3.86□□□□□ -1.79
HOXA3O43365 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC3.86□□□□□ -1.79
HOXA3O43365 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
HOXA3O43365 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC3.86□□□□□ -1.79
HOXA3O43365 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
HOXA3O43365 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC3.85□□□□□ -1.79
HOXA3O43365 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC3.85□□□□□ -1.79
HOXA3O43365 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
HOXA3O43365 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC3.85□□□□□ -1.79
HOXA3O43365 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
HOXA3O43365 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC3.85□□□□□ -1.79
HOXA3O43365 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC3.85□□□□□ -1.79
HOXA3O43365 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
HOXA3O43365 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC3.85□□□□□ -1.79
HOXA3O43365 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
HOXA3O43365 AL365440.1-201ENST00000436135 2167 ntBASIC3.85□□□□□ -1.79
HOXA3O43365 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC3.85□□□□□ -1.79
HOXA3O43365 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC3.85□□□□□ -1.79
HOXA3O43365 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.85□□□□□ -1.79
HOXA3O43365 AC138393.1-203ENST00000327086 343 ntBASIC3.85□□□□□ -1.79
HOXA3O43365 AC126755.2-208ENST00000327792 462 ntBASIC3.85□□□□□ -1.79
HOXA3O43365 AC138969.1-213ENST00000331436 462 ntBASIC3.85□□□□□ -1.79
HOXA3O43365 Y_RNA.133-201ENST00000363428 110 ntBASIC3.85□□□□□ -1.79
HOXA3O43365 RNU6-1303P-201ENST00000364841 107 ntBASIC3.85□□□□□ -1.79
HOXA3O43365 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
HOXA3O43365 Y_RNA.404-201ENST00000383978 102 ntBASIC3.85□□□□□ -1.79
HOXA3O43365 RNU6-890P-201ENST00000384121 107 ntBASIC3.85□□□□□ -1.79
HOXA3O43365 RNU6-214P-201ENST00000384130 107 ntBASIC3.85□□□□□ -1.79
HOXA3O43365 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
HOXA3O43365 AL356057.3-201ENST00000402607 340 ntBASIC3.85□□□□□ -1.79
HOXA3O43365 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
HOXA3O43365 AC007738.1-201ENST00000413892 348 ntBASIC3.85□□□□□ -1.79
HOXA3O43365 AC244098.2-201ENST00000422068 99 ntBASIC3.85□□□□□ -1.79
HOXA3O43365 RPL18P10-201ENST00000425606 538 ntBASIC3.85□□□□□ -1.79
HOXA3O43365 AC073063.1-201ENST00000434352 607 ntBASIC3.85□□□□□ -1.79
HOXA3O43365 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC3.85□□□□□ -1.79
HOXA3O43365 ATP6V0E1P2-201ENST00000441771 245 ntBASIC3.85□□□□□ -1.79
HOXA3O43365 HSFY6P-201ENST00000445573 403 ntBASIC3.85□□□□□ -1.79
HOXA3O43365 H2AFZP5-201ENST00000446960 382 ntBASIC3.85□□□□□ -1.79
HOXA3O43365 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC3.85□□□□□ -1.79
HOXA3O43365 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC3.85□□□□□ -1.79
HOXA3O43365 CYCSP34-201ENST00000458172 304 ntBASIC3.85□□□□□ -1.79
HOXA3O43365 RPS17P2-201ENST00000461663 408 ntBASIC3.85□□□□□ -1.79
HOXA3O43365 RPL31P60-201ENST00000478450 367 ntBASIC3.85□□□□□ -1.79
HOXA3O43365 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.85□□□□□ -1.79
HOXA3O43365 Y_RNA.670-201ENST00000516255 105 ntBASIC3.85□□□□□ -1.79
HOXA3O43365 Y_RNA.720-201ENST00000517166 92 ntBASIC3.85□□□□□ -1.79
HOXA3O43365 SNRPGP16-201ENST00000533275 226 ntBASIC3.85□□□□□ -1.79
HOXA3O43365 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC3.85□□□□□ -1.79
HOXA3O43365 AC025423.5-201ENST00000550230 219 ntBASIC3.85□□□□□ -1.79
HOXA3O43365 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC3.85□□□□□ -1.79
HOXA3O43365 MIR5692A1-201ENST00000580523 69 ntBASIC3.85□□□□□ -1.79
HOXA3O43365 AC100830.2-201ENST00000581636 240 ntBASIC3.85□□□□□ -1.79
HOXA3O43365 MIR4715-201ENST00000584117 79 ntBASIC3.85□□□□□ -1.79
HOXA3O43365 AC018462.2-201ENST00000605375 395 ntBASIC3.85□□□□□ -1.79
HOXA3O43365 AC083806.3-201ENST00000614016 455 ntBASIC3.85□□□□□ -1.79
HOXA3O43365 AC034102.8-201ENST00000615146 484 ntBASIC3.85□□□□□ -1.79
HOXA3O43365 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC3.85□□□□□ -1.79
HOXA3O43365 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC3.85□□□□□ -1.79
HOXA3O43365 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC3.85□□□□□ -1.79
HOXA3O43365 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC3.85□□□□□ -1.79
HOXA3O43365 AC090337.1-201ENST00000579651 2074 ntBASIC3.85□□□□□ -1.79
HOXA3O43365 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC3.85□□□□□ -1.79
HOXA3O43365 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC3.85□□□□□ -1.79
HOXA3O43365 AC104118.1-201ENST00000607625 1589 ntBASIC3.85□□□□□ -1.79
HOXA3O43365 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
HOXA3O43365 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
HOXA3O43365 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
HOXA3O43365 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
HOXA3O43365 MTND5P30-201ENST00000452896 1731 ntBASIC3.84□□□□□ -1.79
HOXA3O43365 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
HOXA3O43365 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC3.84□□□□□ -1.79
HOXA3O43365 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC3.84□□□□□ -1.79
HOXA3O43365 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
HOXA3O43365 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
HOXA3O43365 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC3.84□□□□□ -1.79
HOXA3O43365 MAPK10-349ENST00000641767 3661 ntBASIC3.84□□□□□ -1.79
HOXA3O43365 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.84□□□□□ -1.79
HOXA3O43365 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC3.84□□□□□ -1.79
HOXA3O43365 RNU6-1115P-201ENST00000362490 106 ntBASIC3.84□□□□□ -1.79
HOXA3O43365 Y_RNA.148-201ENST00000363557 117 ntBASIC3.84□□□□□ -1.79
HOXA3O43365 RNU6-266P-201ENST00000364225 107 ntBASIC3.84□□□□□ -1.79
HOXA3O43365 RNA5SP235-201ENST00000365411 114 ntBASIC3.84□□□□□ -1.79
HOXA3O43365 Y_RNA.480-201ENST00000384364 102 ntBASIC3.84□□□□□ -1.79
HOXA3O43365 RNU6-1105P-201ENST00000384774 107 ntBASIC3.84□□□□□ -1.79
HOXA3O43365 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC3.84□□□□□ -1.79
HOXA3O43365 Y_RNA.594-201ENST00000410373 140 ntBASIC3.84□□□□□ -1.79
HOXA3O43365 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXA3O43365 AC018865.2-201ENST00000423631 129 ntBASIC3.84□□□□□ -1.79
HOXA3O43365 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.84□□□□□ -1.79
HOXA3O43365 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
HOXA3O43365 AL451062.2-201ENST00000427515 271 ntBASIC3.84□□□□□ -1.79
HOXA3O43365 AC236972.1-201ENST00000433225 199 ntBASIC3.84□□□□□ -1.79
HOXA3O43365 RPS17P8-201ENST00000434525 335 ntBASIC3.84□□□□□ -1.79
HOXA3O43365 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXA3O43365 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXA3O43365 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
HOXA3O43365 AC026979.1-201ENST00000492525 396 ntBASIC3.84□□□□□ -1.79
HOXA3O43365 HMGB3P16-201ENST00000508037 287 ntBASIC3.84□□□□□ -1.79
HOXA3O43365 AC091868.1-201ENST00000508746 304 ntBASIC3.84□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 135.5 ms