Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.01□□□□□ -2.09
CCDC88BA6NC98 SNORA14A-201ENST00000364773 135 ntBASIC2.01□□□□□ -2.09
CCDC88BA6NC98 BMI1P1-201ENST00000445879 941 ntBASIC2.01□□□□□ -2.09
CCDC88BA6NC98 AC234775.1-201ENST00000454247 670 ntBASIC2.01□□□□□ -2.09
CCDC88BA6NC98 MRPL42P6-201ENST00000486397 371 ntBASIC2.01□□□□□ -2.09
CCDC88BA6NC98 SUMO2P6-201ENST00000505273 288 ntBASIC2.01□□□□□ -2.09
CCDC88BA6NC98 CDC42P4-201ENST00000510507 563 ntBASIC2.01□□□□□ -2.09
CCDC88BA6NC98 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC2.01□□□□□ -2.09
CCDC88BA6NC98 LIAS-206ENST00000513731 826 ntTSL 5 BASIC2.01□□□□□ -2.09
CCDC88BA6NC98 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.01□□□□□ -2.09
CCDC88BA6NC98 RNU2-44P-201ENST00000516795 194 ntBASIC2.01□□□□□ -2.09
CCDC88BA6NC98 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC2.01□□□□□ -2.09
CCDC88BA6NC98 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.01□□□□□ -2.09
CCDC88BA6NC98 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC2.01□□□□□ -2.09
CCDC88BA6NC98 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC2.01□□□□□ -2.09
CCDC88BA6NC98 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC2.01□□□□□ -2.09
CCDC88BA6NC98 AL731537.2-201ENST00000561565 951 ntBASIC2.01□□□□□ -2.09
CCDC88BA6NC98 AC068135.2-201ENST00000569293 1028 ntBASIC2.01□□□□□ -2.09
CCDC88BA6NC98 AC007229.1-201ENST00000590455 412 ntBASIC2.01□□□□□ -2.09
CCDC88BA6NC98 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC2.01□□□□□ -2.09
CCDC88BA6NC98 RNU6ATAC20P-201ENST00000408436 127 ntBASIC2□□□□□ -2.09
CCDC88BA6NC98 LTV1P1-201ENST00000510683 1237 ntBASIC2□□□□□ -2.09
CCDC88BA6NC98 MTCO1P47-201ENST00000523889 1271 ntBASIC2□□□□□ -2.09
CCDC88BA6NC98 AC024619.4-201ENST00000580924 316 ntBASIC2□□□□□ -2.09
CCDC88BA6NC98 AC006338.1-201ENST00000618453 749 ntBASIC2□□□□□ -2.09
CCDC88BA6NC98 AC073055.1-201ENST00000456901 1621 ntBASIC1.99□□□□□ -2.09
CCDC88BA6NC98 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC1.99□□□□□ -2.09
CCDC88BA6NC98 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.99□□□□□ -2.09
CCDC88BA6NC98 MIR524-201ENST00000385242 87 ntBASIC1.99□□□□□ -2.09
CCDC88BA6NC98 RPL21P134-201ENST00000453468 483 ntBASIC1.99□□□□□ -2.09
CCDC88BA6NC98 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC1.99□□□□□ -2.09
CCDC88BA6NC98 AC009220.3-201ENST00000604318 586 ntBASIC1.99□□□□□ -2.09
CCDC88BA6NC98 DAOA-AS1_1.1-201ENST00000613021 201 ntBASIC1.99□□□□□ -2.09
CCDC88BA6NC98 HMGN2P30-201ENST00000423237 256 ntBASIC1.98□□□□□ -2.09
CCDC88BA6NC98 SNRPEP4-201ENST00000435815 279 ntBASIC1.98□□□□□ -2.09
CCDC88BA6NC98 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC1.98□□□□□ -2.09
CCDC88BA6NC98 ATG12P2-201ENST00000456830 416 ntBASIC1.98□□□□□ -2.09
CCDC88BA6NC98 AC096992.1-201ENST00000459808 709 ntBASIC1.98□□□□□ -2.09
CCDC88BA6NC98 AC100801.1-201ENST00000517368 517 ntTSL 3 BASIC1.98□□□□□ -2.09
CCDC88BA6NC98 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC1.98□□□□□ -2.09
CCDC88BA6NC98 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC1.98□□□□□ -2.09
CCDC88BA6NC98 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC1.97□□□□□ -2.09
CCDC88BA6NC98 MIR627-201ENST00000384979 97 ntBASIC1.97□□□□□ -2.09
CCDC88BA6NC98 IPO7P1-201ENST00000442031 636 ntBASIC1.97□□□□□ -2.09
CCDC88BA6NC98 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC1.97□□□□□ -2.09
CCDC88BA6NC98 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC1.97□□□□□ -2.09
CCDC88BA6NC98 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC1.97□□□□□ -2.09
CCDC88BA6NC98 AL138976.2-201ENST00000563989 694 ntBASIC1.97□□□□□ -2.09
CCDC88BA6NC98 AC109446.2-201ENST00000567872 497 ntBASIC1.97□□□□□ -2.09
CCDC88BA6NC98 MTCO1P40-201ENST00000574371 625 ntBASIC1.97□□□□□ -2.09
CCDC88BA6NC98 UBE2L4-201ENST00000587688 464 ntBASIC1.97□□□□□ -2.09
CCDC88BA6NC98 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
CCDC88BA6NC98 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.97□□□□□ -2.09
CCDC88BA6NC98 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
CCDC88BA6NC98 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
CCDC88BA6NC98 RNU4-7P-201ENST00000364758 141 ntBASIC1.96□□□□□ -2.1
CCDC88BA6NC98 MIR598-201ENST00000384868 97 ntBASIC1.96□□□□□ -2.1
CCDC88BA6NC98 RPS20P15-201ENST00000412792 311 ntBASIC1.96□□□□□ -2.1
CCDC88BA6NC98 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC1.96□□□□□ -2.1
CCDC88BA6NC98 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC1.96□□□□□ -2.1
CCDC88BA6NC98 SNRPEP10-201ENST00000420249 274 ntBASIC1.96□□□□□ -2.1
CCDC88BA6NC98 RPL21P66-201ENST00000426566 466 ntBASIC1.96□□□□□ -2.1
CCDC88BA6NC98 MTATP6P4-201ENST00000427725 675 ntBASIC1.96□□□□□ -2.1
CCDC88BA6NC98 AC007395.1-201ENST00000451333 677 ntBASIC1.96□□□□□ -2.1
CCDC88BA6NC98 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC1.96□□□□□ -2.1
CCDC88BA6NC98 SETP7-201ENST00000552169 453 ntBASIC1.96□□□□□ -2.1
CCDC88BA6NC98 AC025918.2-201ENST00000558683 763 ntBASIC1.96□□□□□ -2.1
CCDC88BA6NC98 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
CCDC88BA6NC98 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
CCDC88BA6NC98 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
CCDC88BA6NC98 HMGB1P5-201ENST00000255320 642 ntBASIC1.95□□□□□ -2.1
CCDC88BA6NC98 RNU4-65P-201ENST00000410473 140 ntBASIC1.95□□□□□ -2.1
CCDC88BA6NC98 AC241520.1-201ENST00000422654 1099 ntBASIC1.95□□□□□ -2.1
CCDC88BA6NC98 AL078601.1-201ENST00000444542 271 ntBASIC1.95□□□□□ -2.1
CCDC88BA6NC98 snoU109.4-201ENST00000458953 143 ntBASIC1.95□□□□□ -2.1
CCDC88BA6NC98 RPS27P21-201ENST00000486977 252 ntBASIC1.95□□□□□ -2.1
CCDC88BA6NC98 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.95□□□□□ -2.1
CCDC88BA6NC98 FABP5P5-201ENST00000515537 406 ntBASIC1.95□□□□□ -2.1
CCDC88BA6NC98 AC009127.3-201ENST00000570531 403 ntBASIC1.95□□□□□ -2.1
CCDC88BA6NC98 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC1.95□□□□□ -2.1
CCDC88BA6NC98 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC1.95□□□□□ -2.1
CCDC88BA6NC98 AL031601.2-202ENST00000622650 282 ntBASIC1.95□□□□□ -2.1
CCDC88BA6NC98 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.95□□□□□ -2.1
CCDC88BA6NC98 AL591034.1-201ENST00000407447 340 ntBASIC1.94□□□□□ -2.1
CCDC88BA6NC98 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC1.94□□□□□ -2.1
CCDC88BA6NC98 MTCO1P48-201ENST00000448024 1096 ntBASIC1.94□□□□□ -2.1
CCDC88BA6NC98 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC1.94□□□□□ -2.1
CCDC88BA6NC98 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC1.94□□□□□ -2.1
CCDC88BA6NC98 RNA5SP471-201ENST00000516971 106 ntBASIC1.94□□□□□ -2.1
CCDC88BA6NC98 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC1.94□□□□□ -2.1
CCDC88BA6NC98 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC1.94□□□□□ -2.1
CCDC88BA6NC98 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
CCDC88BA6NC98 AL161912.3-201ENST00000605404 628 ntBASIC1.94□□□□□ -2.1
CCDC88BA6NC98 AC126118.1-201ENST00000607744 628 ntBASIC1.94□□□□□ -2.1
CCDC88BA6NC98 AC106028.5-201ENST00000610332 395 ntBASIC1.94□□□□□ -2.1
CCDC88BA6NC98 MIR7974-201ENST00000615835 79 ntBASIC1.94□□□□□ -2.1
CCDC88BA6NC98 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC1.94□□□□□ -2.1
CCDC88BA6NC98 AL161722.3-201ENST00000605789 2983 ntBASIC1.94□□□□□ -2.1
CCDC88BA6NC98 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC1.94□□□□□ -2.1
CCDC88BA6NC98 RNA5SP105-201ENST00000391123 113 ntBASIC1.94□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 116.1 ms