Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 ACTR3BP4-201ENST00000503033 1244 ntBASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 AC074344.1-201ENST00000512823 224 ntBASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 MTCO1P35-201ENST00000515270 228 ntBASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 FAM60DP-201ENST00000524174 632 ntBASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 MGST1-215ENST00000540056 546 ntTSL 3 BASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 AC067959.1-201ENST00000604334 379 ntBASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 AC110741.2-201ENST00000605278 268 ntBASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 AC004067.1-201ENST00000608733 700 ntBASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 AL355073.2-201ENST00000612106 557 ntBASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 TUG1_2.1-201ENST00000614234 87 ntBASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 SRP54-214ENST00000630962 162 ntTSL 5 BASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 ZNF680P1-201ENST00000436625 1469 ntBASIC4.32□□□□□ -1.72
LIMCH1Q9UPQ0 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
LIMCH1Q9UPQ0 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
LIMCH1Q9UPQ0 AC073343.1-201ENST00000328239 651 ntBASIC4.32□□□□□ -1.72
LIMCH1Q9UPQ0 RNU6-534P-201ENST00000364877 106 ntBASIC4.32□□□□□ -1.72
LIMCH1Q9UPQ0 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
LIMCH1Q9UPQ0 AMD1P2-201ENST00000412936 992 ntBASIC4.32□□□□□ -1.72
LIMCH1Q9UPQ0 SNRPEP10-201ENST00000420249 274 ntBASIC4.32□□□□□ -1.72
LIMCH1Q9UPQ0 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC4.32□□□□□ -1.72
LIMCH1Q9UPQ0 AC004866.2-201ENST00000438285 481 ntBASIC4.32□□□□□ -1.72
LIMCH1Q9UPQ0 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC4.32□□□□□ -1.72
LIMCH1Q9UPQ0 DPPA3P1-201ENST00000448050 469 ntBASIC4.32□□□□□ -1.72
LIMCH1Q9UPQ0 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC4.32□□□□□ -1.72
LIMCH1Q9UPQ0 AL356010.1-201ENST00000456364 102 ntBASIC4.32□□□□□ -1.72
LIMCH1Q9UPQ0 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC4.32□□□□□ -1.72
LIMCH1Q9UPQ0 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC4.32□□□□□ -1.72
LIMCH1Q9UPQ0 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC4.32□□□□□ -1.72
LIMCH1Q9UPQ0 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC4.32□□□□□ -1.72
LIMCH1Q9UPQ0 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC4.32□□□□□ -1.72
LIMCH1Q9UPQ0 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC4.32□□□□□ -1.72
LIMCH1Q9UPQ0 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC4.32□□□□□ -1.72
LIMCH1Q9UPQ0 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC4.32□□□□□ -1.72
LIMCH1Q9UPQ0 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC4.32□□□□□ -1.72
LIMCH1Q9UPQ0 HMGN2P28-201ENST00000606102 262 ntBASIC4.32□□□□□ -1.72
LIMCH1Q9UPQ0 MIR6875-201ENST00000617506 72 ntBASIC4.32□□□□□ -1.72
LIMCH1Q9UPQ0 SNHG22-203ENST00000617833 660 ntBASIC4.32□□□□□ -1.72
LIMCH1Q9UPQ0 AL354798.1-201ENST00000622505 329 ntBASIC4.32□□□□□ -1.72
LIMCH1Q9UPQ0 MIR6810-201ENST00000622701 70 ntBASIC4.32□□□□□ -1.72
LIMCH1Q9UPQ0 AL136313.1-201ENST00000624804 202 ntBASIC4.32□□□□□ -1.72
LIMCH1Q9UPQ0 FER-210ENST00000628534 558 ntTSL 5 BASIC4.32□□□□□ -1.72
LIMCH1Q9UPQ0 AP000553.6-201ENST00000641242 118 ntBASIC4.32□□□□□ -1.72
LIMCH1Q9UPQ0 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
LIMCH1Q9UPQ0 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
LIMCH1Q9UPQ0 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
LIMCH1Q9UPQ0 AC004925.1-201ENST00000624256 2706 ntBASIC4.31□□□□□ -1.72
LIMCH1Q9UPQ0 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
LIMCH1Q9UPQ0 RNY3P14-201ENST00000384309 102 ntBASIC4.31□□□□□ -1.72
LIMCH1Q9UPQ0 AL136372.1-201ENST00000403060 228 ntBASIC4.31□□□□□ -1.72
LIMCH1Q9UPQ0 AL138878.1-201ENST00000405131 347 ntBASIC4.31□□□□□ -1.72
LIMCH1Q9UPQ0 SNORA57.3-201ENST00000411095 141 ntBASIC4.31□□□□□ -1.72
LIMCH1Q9UPQ0 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
LIMCH1Q9UPQ0 RPL21P24-201ENST00000413752 448 ntBASIC4.31□□□□□ -1.72
LIMCH1Q9UPQ0 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC4.31□□□□□ -1.72
LIMCH1Q9UPQ0 AL139247.1-201ENST00000422768 325 ntBASIC4.31□□□□□ -1.72
LIMCH1Q9UPQ0 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC4.31□□□□□ -1.72
LIMCH1Q9UPQ0 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC4.31□□□□□ -1.72
LIMCH1Q9UPQ0 RPL36AP6-201ENST00000435770 321 ntBASIC4.31□□□□□ -1.72
LIMCH1Q9UPQ0 SEPT14P3-201ENST00000439401 183 ntBASIC4.31□□□□□ -1.72
LIMCH1Q9UPQ0 BNIP3P2-201ENST00000441221 577 ntBASIC4.31□□□□□ -1.72
LIMCH1Q9UPQ0 AL732372.2-207ENST00000445840 183 ntBASIC4.31□□□□□ -1.72
LIMCH1Q9UPQ0 FDX1P2-201ENST00000450769 375 ntBASIC4.31□□□□□ -1.72
LIMCH1Q9UPQ0 SEPT14P2-201ENST00000453405 183 ntBASIC4.31□□□□□ -1.72
LIMCH1Q9UPQ0 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC4.31□□□□□ -1.72
LIMCH1Q9UPQ0 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC4.31□□□□□ -1.72
LIMCH1Q9UPQ0 AC126389.1-201ENST00000477436 290 ntBASIC4.31□□□□□ -1.72
LIMCH1Q9UPQ0 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC4.31□□□□□ -1.72
LIMCH1Q9UPQ0 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC4.31□□□□□ -1.72
LIMCH1Q9UPQ0 SEPT14P4-201ENST00000513445 186 ntBASIC4.31□□□□□ -1.72
LIMCH1Q9UPQ0 SNORD27.1-201ENST00000516319 72 ntBASIC4.31□□□□□ -1.72
LIMCH1Q9UPQ0 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC4.31□□□□□ -1.72
LIMCH1Q9UPQ0 FO082796.1-201ENST00000523795 183 ntBASIC4.31□□□□□ -1.72
LIMCH1Q9UPQ0 OR5BN1P-201ENST00000532955 829 ntBASIC4.31□□□□□ -1.72
LIMCH1Q9UPQ0 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC4.31□□□□□ -1.72
LIMCH1Q9UPQ0 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC4.31□□□□□ -1.72
LIMCH1Q9UPQ0 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC4.31□□□□□ -1.72
LIMCH1Q9UPQ0 AC087499.8-201ENST00000578406 226 ntBASIC4.31□□□□□ -1.72
LIMCH1Q9UPQ0 MIR5187-201ENST00000583479 76 ntBASIC4.31□□□□□ -1.72
LIMCH1Q9UPQ0 MIR4293-201ENST00000584305 78 ntBASIC4.31□□□□□ -1.72
LIMCH1Q9UPQ0 XIAPP1-201ENST00000603162 600 ntBASIC4.31□□□□□ -1.72
LIMCH1Q9UPQ0 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC4.31□□□□□ -1.72
LIMCH1Q9UPQ0 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
LIMCH1Q9UPQ0 CKAP2P1-201ENST00000555477 2049 ntBASIC4.31□□□□□ -1.72
LIMCH1Q9UPQ0 IDE-202ENST00000371581 4480 ntTSL 2 BASIC4.31□□□□□ -1.72
LIMCH1Q9UPQ0 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
LIMCH1Q9UPQ0 RNU6-335P-201ENST00000364563 113 ntBASIC4.3□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms