Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 U3.36-201ENST00000408418 213 ntBASIC5.75□□□□□ -1.49
LIMD1Q9UGP4 MIR1290-201ENST00000408735 78 ntBASIC5.75□□□□□ -1.49
LIMD1Q9UGP4 MORN2-203ENST00000409131 544 ntTSL 5 BASIC5.75□□□□□ -1.49
LIMD1Q9UGP4 Y_RNA.793-201ENST00000411222 111 ntBASIC5.75□□□□□ -1.49
LIMD1Q9UGP4 AL356867.1-201ENST00000429623 299 ntBASIC5.75□□□□□ -1.49
LIMD1Q9UGP4 MRPS21P3-201ENST00000436696 262 ntBASIC5.75□□□□□ -1.49
LIMD1Q9UGP4 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC5.75□□□□□ -1.49
LIMD1Q9UGP4 AC083982.1-201ENST00000485679 344 ntBASIC5.75□□□□□ -1.49
LIMD1Q9UGP4 AL359273.1-201ENST00000510918 627 ntBASIC5.75□□□□□ -1.49
LIMD1Q9UGP4 IGLV3-24-201ENST00000517477 197 ntBASIC5.75□□□□□ -1.49
LIMD1Q9UGP4 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC5.75□□□□□ -1.49
LIMD1Q9UGP4 CDC42EP3P1-201ENST00000601004 764 ntBASIC5.75□□□□□ -1.49
LIMD1Q9UGP4 HSPA8P1-201ENST00000425843 1833 ntBASIC5.75□□□□□ -1.49
LIMD1Q9UGP4 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
LIMD1Q9UGP4 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC5.75□□□□□ -1.49
LIMD1Q9UGP4 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC5.75□□□□□ -1.49
LIMD1Q9UGP4 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
LIMD1Q9UGP4 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
LIMD1Q9UGP4 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
LIMD1Q9UGP4 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC5.75□□□□□ -1.49
LIMD1Q9UGP4 AC004925.1-201ENST00000624256 2706 ntBASIC5.75□□□□□ -1.49
LIMD1Q9UGP4 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC5.75□□□□□ -1.49
LIMD1Q9UGP4 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 MIR133B-201ENST00000362210 119 ntBASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 Y_RNA.83-201ENST00000363005 113 ntBASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 U3.6-201ENST00000363622 211 ntBASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 Y_RNA.277-201ENST00000364754 102 ntBASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 SNORA16A-201ENST00000384342 137 ntBASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 Y_RNA.581-201ENST00000391017 97 ntBASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 RNU6ATAC7P-201ENST00000408111 127 ntBASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 MIR1298-201ENST00000408783 112 ntBASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 AC016397.1-201ENST00000412463 242 ntBASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 MTATP6P29-201ENST00000415057 132 ntBASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 KRT8P51-201ENST00000438938 274 ntBASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 RNU7-87P-201ENST00000459343 62 ntBASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 HMGB1P40-201ENST00000525121 540 ntBASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 AC005476.1-201ENST00000554427 397 ntBASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 EDDM3DP-201ENST00000554692 434 ntBASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 AC136932.1-201ENST00000574771 208 ntBASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 AC005046.1-201ENST00000608515 625 ntBASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 CENPF-206ENST00000614578 528 ntTSL 5 BASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 AC127459.3-201ENST00000624328 466 ntBASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 AC074101.1-201ENST00000637861 241 ntBASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 RMST-209ENST00000639542 3269 ntTSL 5 BASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 AC140134.1-201ENST00000511830 3544 ntBASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
LIMD1Q9UGP4 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
LIMD1Q9UGP4 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.73□□□□□ -1.49
LIMD1Q9UGP4 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
LIMD1Q9UGP4 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.73□□□□□ -1.49
LIMD1Q9UGP4 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
LIMD1Q9UGP4 AC114774.1-201ENST00000507410 1770 ntBASIC5.73□□□□□ -1.49
LIMD1Q9UGP4 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
LIMD1Q9UGP4 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC5.73□□□□□ -1.49
LIMD1Q9UGP4 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
LIMD1Q9UGP4 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
LIMD1Q9UGP4 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
LIMD1Q9UGP4 Y_RNA.269-201ENST00000364685 89 ntBASIC5.73□□□□□ -1.49
LIMD1Q9UGP4 Y_RNA.405-201ENST00000383979 100 ntBASIC5.73□□□□□ -1.49
LIMD1Q9UGP4 Y_RNA.451-201ENST00000384200 100 ntBASIC5.73□□□□□ -1.49
LIMD1Q9UGP4 Y_RNA.524-201ENST00000384564 100 ntBASIC5.73□□□□□ -1.49
LIMD1Q9UGP4 Y_RNA.561-201ENST00000384694 100 ntBASIC5.73□□□□□ -1.49
LIMD1Q9UGP4 MTCO3P29-201ENST00000432119 779 ntBASIC5.73□□□□□ -1.49
LIMD1Q9UGP4 RPL23AP22-201ENST00000437556 453 ntBASIC5.73□□□□□ -1.49
LIMD1Q9UGP4 HIGD1AP2-201ENST00000446367 280 ntBASIC5.73□□□□□ -1.49
LIMD1Q9UGP4 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC5.73□□□□□ -1.49
LIMD1Q9UGP4 ANXA2P1-201ENST00000505539 926 ntBASIC5.73□□□□□ -1.49
LIMD1Q9UGP4 RNU6-377P-201ENST00000515965 102 ntBASIC5.73□□□□□ -1.49
LIMD1Q9UGP4 AC010186.2-204ENST00000537668 439 ntBASIC5.73□□□□□ -1.49
LIMD1Q9UGP4 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC5.73□□□□□ -1.49
LIMD1Q9UGP4 AC069307.1-201ENST00000602820 447 ntBASIC5.73□□□□□ -1.49
LIMD1Q9UGP4 AC109583.2-201ENST00000617367 129 ntBASIC5.73□□□□□ -1.49
LIMD1Q9UGP4 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC5.73□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 115.3 ms