Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.24□□□□□ -1.89
SIX2Q9NPC8 PRSS3P4-201ENST00000453323 162 ntBASIC3.24□□□□□ -1.89
SIX2Q9NPC8 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC3.24□□□□□ -1.89
SIX2Q9NPC8 SNORD121B-201ENST00000458838 81 ntBASIC3.24□□□□□ -1.89
SIX2Q9NPC8 RPL21P129-201ENST00000491732 478 ntBASIC3.24□□□□□ -1.89
SIX2Q9NPC8 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC3.24□□□□□ -1.89
SIX2Q9NPC8 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC3.24□□□□□ -1.89
SIX2Q9NPC8 AC008885.1-201ENST00000514930 301 ntBASIC3.24□□□□□ -1.89
SIX2Q9NPC8 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC3.24□□□□□ -1.89
SIX2Q9NPC8 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.24□□□□□ -1.89
SIX2Q9NPC8 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.24□□□□□ -1.89
SIX2Q9NPC8 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.24□□□□□ -1.89
SIX2Q9NPC8 AC137800.2-201ENST00000574375 120 ntBASIC3.24□□□□□ -1.89
SIX2Q9NPC8 MIR3913-1-201ENST00000577744 102 ntBASIC3.24□□□□□ -1.89
SIX2Q9NPC8 MIR1254-2-201ENST00000579553 63 ntBASIC3.24□□□□□ -1.89
SIX2Q9NPC8 HMGN1P30-201ENST00000589286 268 ntBASIC3.24□□□□□ -1.89
SIX2Q9NPC8 OR10AB1P-201ENST00000609613 938 ntBASIC3.24□□□□□ -1.89
SIX2Q9NPC8 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
SIX2Q9NPC8 AL590099.1-201ENST00000615276 138 ntBASIC3.24□□□□□ -1.89
SIX2Q9NPC8 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.24□□□□□ -1.89
SIX2Q9NPC8 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC3.24□□□□□ -1.89
SIX2Q9NPC8 AC079597.1-201ENST00000624306 508 ntBASIC3.24□□□□□ -1.89
SIX2Q9NPC8 MTND5P19-201ENST00000424872 1794 ntBASIC3.24□□□□□ -1.89
SIX2Q9NPC8 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
SIX2Q9NPC8 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC3.23□□□□□ -1.89
SIX2Q9NPC8 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
SIX2Q9NPC8 AP003122.5-201ENST00000527668 3766 ntBASIC3.23□□□□□ -1.89
SIX2Q9NPC8 MIR22-201ENST00000362190 85 ntBASIC3.23□□□□□ -1.89
SIX2Q9NPC8 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
SIX2Q9NPC8 RNU6-1215P-201ENST00000384441 102 ntBASIC3.23□□□□□ -1.89
SIX2Q9NPC8 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
SIX2Q9NPC8 FCF1P10-201ENST00000407590 479 ntBASIC3.23□□□□□ -1.89
SIX2Q9NPC8 RNA5SP274-201ENST00000410484 108 ntBASIC3.23□□□□□ -1.89
SIX2Q9NPC8 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC3.23□□□□□ -1.89
SIX2Q9NPC8 SPA17P1-201ENST00000416656 452 ntBASIC3.23□□□□□ -1.89
SIX2Q9NPC8 RPS3AP44-201ENST00000425466 790 ntBASIC3.23□□□□□ -1.89
SIX2Q9NPC8 AC104651.1-201ENST00000427559 735 ntBASIC3.23□□□□□ -1.89
SIX2Q9NPC8 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.23□□□□□ -1.89
SIX2Q9NPC8 USP9YP28-201ENST00000435142 589 ntBASIC3.23□□□□□ -1.89
SIX2Q9NPC8 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
SIX2Q9NPC8 AC006028.1-201ENST00000438379 402 ntBASIC3.23□□□□□ -1.89
SIX2Q9NPC8 RPL17P49-201ENST00000443728 411 ntBASIC3.23□□□□□ -1.89
SIX2Q9NPC8 AC112653.1-201ENST00000443851 386 ntBASIC3.23□□□□□ -1.89
SIX2Q9NPC8 GAPDHP17-201ENST00000449858 1001 ntBASIC3.23□□□□□ -1.89
SIX2Q9NPC8 RGS5-217ENST00000451759 835 ntTSL 3 BASIC3.23□□□□□ -1.89
SIX2Q9NPC8 AL358832.1-201ENST00000497800 389 ntBASIC3.23□□□□□ -1.89
SIX2Q9NPC8 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC3.23□□□□□ -1.89
SIX2Q9NPC8 AC017037.2-201ENST00000513850 890 ntBASIC3.23□□□□□ -1.89
SIX2Q9NPC8 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC3.23□□□□□ -1.89
SIX2Q9NPC8 SNORA18.6-201ENST00000516792 115 ntBASIC3.23□□□□□ -1.89
SIX2Q9NPC8 RNA5SP380-201ENST00000517190 98 ntBASIC3.23□□□□□ -1.89
SIX2Q9NPC8 AC022616.6-201ENST00000520479 119 ntBASIC3.23□□□□□ -1.89
SIX2Q9NPC8 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC3.23□□□□□ -1.89
SIX2Q9NPC8 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
SIX2Q9NPC8 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
SIX2Q9NPC8 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC3.23□□□□□ -1.89
SIX2Q9NPC8 AC123904.2-201ENST00000548059 300 ntBASIC3.23□□□□□ -1.89
SIX2Q9NPC8 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC3.23□□□□□ -1.89
SIX2Q9NPC8 AC245505.1-201ENST00000556398 224 ntBASIC3.23□□□□□ -1.89
SIX2Q9NPC8 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC3.23□□□□□ -1.89
SIX2Q9NPC8 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC3.23□□□□□ -1.89
SIX2Q9NPC8 AC010546.1-201ENST00000569391 485 ntBASIC3.23□□□□□ -1.89
SIX2Q9NPC8 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC3.23□□□□□ -1.89
SIX2Q9NPC8 MIR5047-201ENST00000579212 100 ntBASIC3.23□□□□□ -1.89
SIX2Q9NPC8 IGHV3-29-201ENST00000604817 344 ntBASIC3.23□□□□□ -1.89
SIX2Q9NPC8 AC009902.3-201ENST00000606235 2172 ntBASIC3.23□□□□□ -1.89
SIX2Q9NPC8 AC069200.1-201ENST00000609511 323 ntBASIC3.23□□□□□ -1.89
SIX2Q9NPC8 UBE2Q2P2-203ENST00000613592 761 ntBASIC3.23□□□□□ -1.89
SIX2Q9NPC8 AC013476.2-201ENST00000614456 459 ntBASIC3.23□□□□□ -1.89
SIX2Q9NPC8 AC091834.1-201ENST00000614543 472 ntBASIC3.23□□□□□ -1.89
SIX2Q9NPC8 AC009159.1-201ENST00000618386 642 ntBASIC3.23□□□□□ -1.89
SIX2Q9NPC8 AC002550.2-201ENST00000621246 394 ntBASIC3.23□□□□□ -1.89
SIX2Q9NPC8 AC012150.2-201ENST00000621300 544 ntBASIC3.23□□□□□ -1.89
SIX2Q9NPC8 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
SIX2Q9NPC8 AL133412.1-201ENST00000380194 2992 ntBASIC3.23□□□□□ -1.89
SIX2Q9NPC8 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
SIX2Q9NPC8 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
SIX2Q9NPC8 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
SIX2Q9NPC8 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
SIX2Q9NPC8 MTND5P27-201ENST00000428871 1720 ntBASIC3.22□□□□□ -1.89
SIX2Q9NPC8 AC011460.1-201ENST00000636268 1834 ntBASIC3.22□□□□□ -1.89
SIX2Q9NPC8 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
SIX2Q9NPC8 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.22□□□□□ -1.89
SIX2Q9NPC8 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
SIX2Q9NPC8 RNA5SP72-201ENST00000364442 117 ntBASIC3.22□□□□□ -1.89
SIX2Q9NPC8 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
SIX2Q9NPC8 Y_RNA.582-201ENST00000391023 95 ntBASIC3.22□□□□□ -1.89
SIX2Q9NPC8 SNORA48.7-201ENST00000391302 135 ntBASIC3.22□□□□□ -1.89
SIX2Q9NPC8 ERMN-204ENST00000409925 556 ntTSL 4 BASIC3.22□□□□□ -1.89
SIX2Q9NPC8 RNU6-648P-201ENST00000410190 107 ntBASIC3.22□□□□□ -1.89
SIX2Q9NPC8 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC3.22□□□□□ -1.89
SIX2Q9NPC8 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3.22□□□□□ -1.89
SIX2Q9NPC8 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC3.22□□□□□ -1.89
SIX2Q9NPC8 AC009961.2-201ENST00000435771 251 ntBASIC3.22□□□□□ -1.89
SIX2Q9NPC8 RPS29P6-201ENST00000438196 145 ntBASIC3.22□□□□□ -1.89
SIX2Q9NPC8 AL049734.2-201ENST00000441066 616 ntBASIC3.22□□□□□ -1.89
SIX2Q9NPC8 AL358232.1-201ENST00000448030 501 ntBASIC3.22□□□□□ -1.89
SIX2Q9NPC8 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC3.22□□□□□ -1.89
SIX2Q9NPC8 AP004217.1-201ENST00000480579 346 ntBASIC3.22□□□□□ -1.89
SIX2Q9NPC8 RPL7P23-201ENST00000493874 747 ntBASIC3.22□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms