Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3□□□□□ -1.93
NKX3-1Q99801 AC004908.2-201ENST00000609090 574 ntBASIC3□□□□□ -1.93
NKX3-1Q99801 Z99129.1-201ENST00000612510 255 ntBASIC3□□□□□ -1.93
NKX3-1Q99801 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC3□□□□□ -1.93
NKX3-1Q99801 AC093838.1-201ENST00000613014 469 ntBASIC3□□□□□ -1.93
NKX3-1Q99801 UBE2Q2P2-203ENST00000613592 761 ntBASIC3□□□□□ -1.93
NKX3-1Q99801 AC006338.1-201ENST00000618453 749 ntBASIC3□□□□□ -1.93
NKX3-1Q99801 AC095031.1-201ENST00000623685 672 ntBASIC3□□□□□ -1.93
NKX3-1Q99801 MIR7153-201ENST00000637758 57 ntBASIC3□□□□□ -1.93
NKX3-1Q99801 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC3□□□□□ -1.93
NKX3-1Q99801 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3□□□□□ -1.93
NKX3-1Q99801 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC2.99□□□□□ -1.93
NKX3-1Q99801 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC2.99□□□□□ -1.93
NKX3-1Q99801 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC2.99□□□□□ -1.93
NKX3-1Q99801 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC2.99□□□□□ -1.93
NKX3-1Q99801 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
NKX3-1Q99801 5S_rRNA.1-201ENST00000364415 116 ntBASIC2.99□□□□□ -1.93
NKX3-1Q99801 ERMN-204ENST00000409925 556 ntTSL 4 BASIC2.99□□□□□ -1.93
NKX3-1Q99801 RNU4-65P-201ENST00000410473 140 ntBASIC2.99□□□□□ -1.93
NKX3-1Q99801 RNA5SP107-201ENST00000411358 122 ntBASIC2.99□□□□□ -1.93
NKX3-1Q99801 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC2.99□□□□□ -1.93
NKX3-1Q99801 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC2.99□□□□□ -1.93
NKX3-1Q99801 USP9YP36-201ENST00000424581 829 ntBASIC2.99□□□□□ -1.93
NKX3-1Q99801 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC2.99□□□□□ -1.93
NKX3-1Q99801 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC2.99□□□□□ -1.93
NKX3-1Q99801 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC2.99□□□□□ -1.93
NKX3-1Q99801 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
NKX3-1Q99801 AL662791.1-201ENST00000441992 928 ntBASIC2.99□□□□□ -1.93
NKX3-1Q99801 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC2.99□□□□□ -1.93
NKX3-1Q99801 AL357552.1-201ENST00000445254 415 ntBASIC2.99□□□□□ -1.93
NKX3-1Q99801 AL162389.1-201ENST00000449233 177 ntBASIC2.99□□□□□ -1.93
NKX3-1Q99801 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC2.99□□□□□ -1.93
NKX3-1Q99801 RNU7-59P-201ENST00000459101 61 ntBASIC2.99□□□□□ -1.93
NKX3-1Q99801 KLF3P2-201ENST00000465138 268 ntBASIC2.99□□□□□ -1.93
NKX3-1Q99801 RPL7P49-201ENST00000471402 708 ntBASIC2.99□□□□□ -1.93
NKX3-1Q99801 RN7SL442P-201ENST00000473804 320 ntBASIC2.99□□□□□ -1.93
NKX3-1Q99801 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC2.99□□□□□ -1.93
NKX3-1Q99801 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC2.99□□□□□ -1.93
NKX3-1Q99801 PHBP14-201ENST00000512887 367 ntBASIC2.99□□□□□ -1.93
NKX3-1Q99801 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC2.99□□□□□ -1.93
NKX3-1Q99801 RNU6-1220P-201ENST00000517126 108 ntBASIC2.99□□□□□ -1.93
NKX3-1Q99801 DEFB108A-201ENST00000530110 222 ntBASIC2.99□□□□□ -1.93
NKX3-1Q99801 AC022880.1-201ENST00000534017 973 ntBASIC2.99□□□□□ -1.93
NKX3-1Q99801 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC2.99□□□□□ -1.93
NKX3-1Q99801 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC2.99□□□□□ -1.93
NKX3-1Q99801 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC2.99□□□□□ -1.93
NKX3-1Q99801 AC123904.3-201ENST00000547218 814 ntBASIC2.99□□□□□ -1.93
NKX3-1Q99801 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC2.99□□□□□ -1.93
NKX3-1Q99801 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC2.99□□□□□ -1.93
NKX3-1Q99801 MIR4293-201ENST00000584305 78 ntBASIC2.99□□□□□ -1.93
NKX3-1Q99801 AC087683.1-201ENST00000591187 441 ntBASIC2.99□□□□□ -1.93
NKX3-1Q99801 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC2.99□□□□□ -1.93
NKX3-1Q99801 KC877982.1-201ENST00000602313 470 ntBASIC2.99□□□□□ -1.93
NKX3-1Q99801 AC024220.1-201ENST00000603675 484 ntBASIC2.99□□□□□ -1.93
NKX3-1Q99801 AC106900.2-201ENST00000604994 317 ntBASIC2.99□□□□□ -1.93
NKX3-1Q99801 AL139286.2-201ENST00000606838 396 ntBASIC2.99□□□□□ -1.93
NKX3-1Q99801 AC090970.3-201ENST00000612566 866 ntBASIC2.99□□□□□ -1.93
NKX3-1Q99801 AL589743.7-201ENST00000612637 233 ntBASIC2.99□□□□□ -1.93
NKX3-1Q99801 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
NKX3-1Q99801 AC012314.7-201ENST00000619693 93 ntBASIC2.99□□□□□ -1.93
NKX3-1Q99801 AC099842.1-201ENST00000619919 596 ntBASIC2.99□□□□□ -1.93
NKX3-1Q99801 TEX41-300ENST00000631048 69 ntTSL 5 BASIC2.99□□□□□ -1.93
NKX3-1Q99801 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC2.99□□□□□ -1.93
NKX3-1Q99801 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC2.99□□□□□ -1.93
NKX3-1Q99801 PAPPA-AS1-201ENST00000445861 2450 ntBASIC2.99□□□□□ -1.93
NKX3-1Q99801 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
NKX3-1Q99801 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
NKX3-1Q99801 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
NKX3-1Q99801 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC2.98□□□□□ -1.93
NKX3-1Q99801 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
NKX3-1Q99801 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
NKX3-1Q99801 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC2.98□□□□□ -1.93
NKX3-1Q99801 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC2.98□□□□□ -1.93
NKX3-1Q99801 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC2.98□□□□□ -1.93
NKX3-1Q99801 OR1S2-201ENST00000302592 978 ntBASIC2.98□□□□□ -1.93
NKX3-1Q99801 RNU6-623P-201ENST00000363143 105 ntBASIC2.98□□□□□ -1.93
NKX3-1Q99801 SNORA73.2-201ENST00000364946 201 ntBASIC2.98□□□□□ -1.93
NKX3-1Q99801 SNORA36C-201ENST00000384289 132 ntBASIC2.98□□□□□ -1.93
NKX3-1Q99801 MIR7-3-201ENST00000384898 110 ntBASIC2.98□□□□□ -1.93
NKX3-1Q99801 AL663109.1-201ENST00000411498 844 ntBASIC2.98□□□□□ -1.93
NKX3-1Q99801 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC2.98□□□□□ -1.93
NKX3-1Q99801 AC007899.1-201ENST00000412776 775 ntBASIC2.98□□□□□ -1.93
NKX3-1Q99801 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC2.98□□□□□ -1.93
NKX3-1Q99801 Z99755.1-201ENST00000414048 380 ntBASIC2.98□□□□□ -1.93
NKX3-1Q99801 MTCO3P41-201ENST00000414801 328 ntBASIC2.98□□□□□ -1.93
NKX3-1Q99801 AL356968.1-201ENST00000416622 474 ntBASIC2.98□□□□□ -1.93
NKX3-1Q99801 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC2.98□□□□□ -1.93
NKX3-1Q99801 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC2.98□□□□□ -1.93
NKX3-1Q99801 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC2.98□□□□□ -1.93
NKX3-1Q99801 AC091286.1-201ENST00000431233 461 ntBASIC2.98□□□□□ -1.93
NKX3-1Q99801 HMGN2P31-201ENST00000432430 273 ntBASIC2.98□□□□□ -1.93
NKX3-1Q99801 HSPD1P21-201ENST00000436541 245 ntBASIC2.98□□□□□ -1.93
NKX3-1Q99801 RPL35AP22-201ENST00000436855 335 ntBASIC2.98□□□□□ -1.93
NKX3-1Q99801 AC005094.1-201ENST00000440420 368 ntBASIC2.98□□□□□ -1.93
NKX3-1Q99801 GAPDHP27-201ENST00000447427 1020 ntBASIC2.98□□□□□ -1.93
NKX3-1Q99801 PRSS3P4-201ENST00000453323 162 ntBASIC2.98□□□□□ -1.93
NKX3-1Q99801 U3.44-201ENST00000458938 192 ntBASIC2.98□□□□□ -1.93
NKX3-1Q99801 RN7SL594P-201ENST00000470590 287 ntBASIC2.98□□□□□ -1.93
NKX3-1Q99801 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
NKX3-1Q99801 AC023598.1-201ENST00000472521 361 ntBASIC2.98□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms