Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 MTATP6P16-201ENST00000434543 526 ntBASIC3.6□□□□□ -1.83
NPAS1Q99742 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC3.6□□□□□ -1.83
NPAS1Q99742 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.83
NPAS1Q99742 NEFMP1-201ENST00000443423 1006 ntBASIC3.6□□□□□ -1.83
NPAS1Q99742 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC3.6□□□□□ -1.83
NPAS1Q99742 HSFY6P-201ENST00000445573 403 ntBASIC3.6□□□□□ -1.83
NPAS1Q99742 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC3.6□□□□□ -1.83
NPAS1Q99742 AL136097.1-201ENST00000456945 913 ntBASIC3.6□□□□□ -1.83
NPAS1Q99742 RNU7-63P-201ENST00000459054 62 ntBASIC3.6□□□□□ -1.83
NPAS1Q99742 RPL37P6-201ENST00000460682 294 ntBASIC3.6□□□□□ -1.83
NPAS1Q99742 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC3.6□□□□□ -1.83
NPAS1Q99742 AC126389.1-201ENST00000477436 290 ntBASIC3.6□□□□□ -1.83
NPAS1Q99742 AC019235.1-201ENST00000503847 207 ntBASIC3.6□□□□□ -1.83
NPAS1Q99742 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.6□□□□□ -1.83
NPAS1Q99742 AC108043.1-201ENST00000512696 574 ntBASIC3.6□□□□□ -1.83
NPAS1Q99742 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC3.6□□□□□ -1.83
NPAS1Q99742 Y_RNA.693-201ENST00000516641 110 ntBASIC3.6□□□□□ -1.83
NPAS1Q99742 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC3.6□□□□□ -1.83
NPAS1Q99742 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC3.6□□□□□ -1.83
NPAS1Q99742 OR5AQ1P-201ENST00000527596 927 ntBASIC3.6□□□□□ -1.83
NPAS1Q99742 OR5AL2P-201ENST00000532185 920 ntBASIC3.6□□□□□ -1.83
NPAS1Q99742 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
NPAS1Q99742 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC3.6□□□□□ -1.83
NPAS1Q99742 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC3.6□□□□□ -1.83
NPAS1Q99742 AC005951.2-201ENST00000576282 495 ntBASIC3.6□□□□□ -1.83
NPAS1Q99742 MIR3921-201ENST00000577308 85 ntBASIC3.6□□□□□ -1.83
NPAS1Q99742 RN7SL703P-201ENST00000578485 302 ntBASIC3.6□□□□□ -1.83
NPAS1Q99742 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.6□□□□□ -1.83
NPAS1Q99742 BDH2P1-201ENST00000602288 736 ntBASIC3.6□□□□□ -1.83
NPAS1Q99742 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.6□□□□□ -1.83
NPAS1Q99742 AL606834.2-201ENST00000602954 668 ntBASIC3.6□□□□□ -1.83
NPAS1Q99742 DPPA3P3-201ENST00000603842 430 ntBASIC3.6□□□□□ -1.83
NPAS1Q99742 AL158032.1-201ENST00000605401 106 ntBASIC3.6□□□□□ -1.83
NPAS1Q99742 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.6□□□□□ -1.83
NPAS1Q99742 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC3.6□□□□□ -1.83
NPAS1Q99742 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
NPAS1Q99742 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC3.6□□□□□ -1.83
NPAS1Q99742 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
NPAS1Q99742 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.6□□□□□ -1.83
NPAS1Q99742 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
NPAS1Q99742 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
NPAS1Q99742 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
NPAS1Q99742 SNORA62.1-201ENST00000364287 154 ntBASIC3.59□□□□□ -1.83
NPAS1Q99742 RNU6-1322P-201ENST00000364309 107 ntBASIC3.59□□□□□ -1.83
NPAS1Q99742 Y_RNA.367-201ENST00000365544 101 ntBASIC3.59□□□□□ -1.83
NPAS1Q99742 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.83
NPAS1Q99742 RNU6-483P-201ENST00000384088 108 ntBASIC3.59□□□□□ -1.83
NPAS1Q99742 RNU6-74P-201ENST00000384235 107 ntBASIC3.59□□□□□ -1.83
NPAS1Q99742 HSPE1P8-201ENST00000406997 288 ntBASIC3.59□□□□□ -1.83
NPAS1Q99742 MIR1193-201ENST00000408109 78 ntBASIC3.59□□□□□ -1.83
NPAS1Q99742 AC114491.1-201ENST00000416095 246 ntBASIC3.59□□□□□ -1.83
NPAS1Q99742 BTF3L4P3-201ENST00000418879 476 ntBASIC3.59□□□□□ -1.83
NPAS1Q99742 AL353193.1-201ENST00000421444 268 ntBASIC3.59□□□□□ -1.83
NPAS1Q99742 MTCO1P20-201ENST00000425366 358 ntBASIC3.59□□□□□ -1.83
NPAS1Q99742 MRPS10P2-201ENST00000431226 381 ntBASIC3.59□□□□□ -1.83
NPAS1Q99742 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.59□□□□□ -1.83
NPAS1Q99742 RPS15AP9-201ENST00000439856 381 ntBASIC3.59□□□□□ -1.83
NPAS1Q99742 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.59□□□□□ -1.83
NPAS1Q99742 MTND4P25-201ENST00000441039 533 ntBASIC3.59□□□□□ -1.83
NPAS1Q99742 RPL21P133-201ENST00000443666 476 ntBASIC3.59□□□□□ -1.83
NPAS1Q99742 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC3.59□□□□□ -1.83
NPAS1Q99742 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC3.59□□□□□ -1.83
NPAS1Q99742 GAPDHP27-201ENST00000447427 1020 ntBASIC3.59□□□□□ -1.83
NPAS1Q99742 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC3.59□□□□□ -1.83
NPAS1Q99742 RPL31P60-201ENST00000478450 367 ntBASIC3.59□□□□□ -1.83
NPAS1Q99742 AC068587.1-201ENST00000483613 781 ntBASIC3.59□□□□□ -1.83
NPAS1Q99742 ARL4AP2-201ENST00000507378 601 ntBASIC3.59□□□□□ -1.83
NPAS1Q99742 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC3.59□□□□□ -1.83
NPAS1Q99742 AC026402.1-201ENST00000513642 170 ntBASIC3.59□□□□□ -1.83
NPAS1Q99742 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.59□□□□□ -1.83
NPAS1Q99742 RNU6-1281P-201ENST00000516223 105 ntBASIC3.59□□□□□ -1.83
NPAS1Q99742 AC087369.1-201ENST00000520775 996 ntBASIC3.59□□□□□ -1.83
NPAS1Q99742 PTS-202ENST00000524931 696 ntTSL 3 BASIC3.59□□□□□ -1.83
NPAS1Q99742 MTND1P35-201ENST00000526739 508 ntBASIC3.59□□□□□ -1.83
NPAS1Q99742 AP003072.2-201ENST00000527756 676 ntBASIC3.59□□□□□ -1.83
NPAS1Q99742 AP001646.1-201ENST00000527936 915 ntBASIC3.59□□□□□ -1.83
NPAS1Q99742 ARL6IP1P1-201ENST00000545836 610 ntBASIC3.59□□□□□ -1.83
NPAS1Q99742 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC3.59□□□□□ -1.83
NPAS1Q99742 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC3.59□□□□□ -1.83
NPAS1Q99742 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC3.59□□□□□ -1.83
NPAS1Q99742 AC034105.3-201ENST00000565294 442 ntBASIC3.59□□□□□ -1.83
NPAS1Q99742 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC3.59□□□□□ -1.83
NPAS1Q99742 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC3.59□□□□□ -1.83
NPAS1Q99742 AL354950.2-201ENST00000617939 290 ntBASIC3.59□□□□□ -1.83
NPAS1Q99742 AC048347.1-201ENST00000624621 427 ntBASIC3.59□□□□□ -1.83
NPAS1Q99742 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC3.59□□□□□ -1.83
NPAS1Q99742 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.59□□□□□ -1.83
NPAS1Q99742 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.83
NPAS1Q99742 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
NPAS1Q99742 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC3.59□□□□□ -1.83
NPAS1Q99742 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.59□□□□□ -1.84
NPAS1Q99742 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC3.58□□□□□ -1.84
NPAS1Q99742 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.58□□□□□ -1.84
NPAS1Q99742 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
NPAS1Q99742 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
NPAS1Q99742 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.58□□□□□ -1.84
NPAS1Q99742 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
NPAS1Q99742 Y_RNA.22-201ENST00000362492 102 ntBASIC3.58□□□□□ -1.84
NPAS1Q99742 RNU6-1090P-201ENST00000364065 94 ntBASIC3.58□□□□□ -1.84
NPAS1Q99742 SNORD6-201ENST00000365444 73 ntBASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 141.1 ms