Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC3□□□□□ -1.93
HDDC3Q8N4P3 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3□□□□□ -1.93
HDDC3Q8N4P3 AC010587.2-201ENST00000511727 448 ntBASIC3□□□□□ -1.93
HDDC3Q8N4P3 RNA5SP380-201ENST00000517190 98 ntBASIC3□□□□□ -1.93
HDDC3Q8N4P3 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC3□□□□□ -1.93
HDDC3Q8N4P3 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3□□□□□ -1.93
HDDC3Q8N4P3 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3□□□□□ -1.93
HDDC3Q8N4P3 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC3□□□□□ -1.93
HDDC3Q8N4P3 TPMTP1-201ENST00000592307 737 ntBASIC3□□□□□ -1.93
HDDC3Q8N4P3 AC005014.3-201ENST00000605985 190 ntBASIC3□□□□□ -1.93
HDDC3Q8N4P3 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3□□□□□ -1.93
HDDC3Q8N4P3 AC103710.4-201ENST00000609301 899 ntBASIC3□□□□□ -1.93
HDDC3Q8N4P3 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC3□□□□□ -1.93
HDDC3Q8N4P3 AC079228.1-201ENST00000624774 1049 ntBASIC3□□□□□ -1.93
HDDC3Q8N4P3 AC099063.3-201ENST00000642066 185 ntBASIC3□□□□□ -1.93
HDDC3Q8N4P3 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3□□□□□ -1.93
HDDC3Q8N4P3 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3□□□□□ -1.93
HDDC3Q8N4P3 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC3□□□□□ -1.93
HDDC3Q8N4P3 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
HDDC3Q8N4P3 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3□□□□□ -1.93
HDDC3Q8N4P3 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3□□□□□ -1.93
HDDC3Q8N4P3 ZNF519P1-201ENST00000449011 1626 ntBASIC3□□□□□ -1.93
HDDC3Q8N4P3 AL359693.1-201ENST00000614959 2407 ntBASIC2.99□□□□□ -1.93
HDDC3Q8N4P3 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
HDDC3Q8N4P3 AC073325.2-201ENST00000339545 159 ntBASIC2.99□□□□□ -1.93
HDDC3Q8N4P3 RNU6-853P-201ENST00000364306 107 ntBASIC2.99□□□□□ -1.93
HDDC3Q8N4P3 RNU6-851P-201ENST00000384565 107 ntBASIC2.99□□□□□ -1.93
HDDC3Q8N4P3 U3.20-201ENST00000390909 217 ntBASIC2.99□□□□□ -1.93
HDDC3Q8N4P3 RPS4XP8-201ENST00000402039 771 ntBASIC2.99□□□□□ -1.93
HDDC3Q8N4P3 MIR320C1-201ENST00000408566 88 ntBASIC2.99□□□□□ -1.93
HDDC3Q8N4P3 RPS20P5-201ENST00000434808 360 ntBASIC2.99□□□□□ -1.93
HDDC3Q8N4P3 AL714022.1-201ENST00000439897 151 ntBASIC2.99□□□□□ -1.93
HDDC3Q8N4P3 AL135938.1-201ENST00000443141 297 ntBASIC2.99□□□□□ -1.93
HDDC3Q8N4P3 EEF1B2P7-201ENST00000451177 676 ntBASIC2.99□□□□□ -1.93
HDDC3Q8N4P3 AP1S2P1-201ENST00000457344 379 ntBASIC2.99□□□□□ -1.93
HDDC3Q8N4P3 AC116337.2-201ENST00000477662 156 ntBASIC2.99□□□□□ -1.93
HDDC3Q8N4P3 AC138853.1-201ENST00000503549 823 ntBASIC2.99□□□□□ -1.93
HDDC3Q8N4P3 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.99□□□□□ -1.93
HDDC3Q8N4P3 AL133271.1-201ENST00000538229 291 ntBASIC2.99□□□□□ -1.93
HDDC3Q8N4P3 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
HDDC3Q8N4P3 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC2.99□□□□□ -1.93
HDDC3Q8N4P3 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC2.99□□□□□ -1.93
HDDC3Q8N4P3 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC2.99□□□□□ -1.93
HDDC3Q8N4P3 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC2.99□□□□□ -1.93
HDDC3Q8N4P3 AC138761.3-201ENST00000579993 334 ntBASIC2.99□□□□□ -1.93
HDDC3Q8N4P3 AL139344.1-201ENST00000605228 195 ntBASIC2.99□□□□□ -1.93
HDDC3Q8N4P3 UBE2Q2P6-201ENST00000612666 153 ntBASIC2.99□□□□□ -1.93
HDDC3Q8N4P3 AC007318.2-201ENST00000620999 243 ntBASIC2.99□□□□□ -1.93
HDDC3Q8N4P3 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC2.99□□□□□ -1.93
HDDC3Q8N4P3 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC2.99□□□□□ -1.93
HDDC3Q8N4P3 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.99□□□□□ -1.93
HDDC3Q8N4P3 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
HDDC3Q8N4P3 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC2.99□□□□□ -1.93
HDDC3Q8N4P3 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 RNA5SP432-201ENST00000362480 116 ntBASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 RNU6-754P-201ENST00000391166 107 ntBASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 AL590084.2-201ENST00000401481 382 ntBASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 AL139095.1-201ENST00000404326 391 ntBASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 TXNP7-201ENST00000406296 293 ntBASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 AC083875.1-201ENST00000419509 405 ntBASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 NUP35P1-201ENST00000422734 947 ntBASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 AL354692.1-201ENST00000423044 315 ntBASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 AC092648.1-201ENST00000425870 423 ntBASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 ZNF863P-201ENST00000426746 417 ntBASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 AC009414.1-201ENST00000427200 443 ntBASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 ZNF736P1Y-201ENST00000440402 1276 ntBASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 BNIP3P2-201ENST00000441221 577 ntBASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 AL162389.1-201ENST00000449233 177 ntBASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 AC021146.8-201ENST00000507455 733 ntBASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 AC093281.2-201ENST00000510153 597 ntBASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 OR5BM1P-201ENST00000512021 366 ntBASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 RNA5SP216-201ENST00000516111 123 ntBASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 AC128657.1-201ENST00000549459 145 ntBASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 VN1R90P-201ENST00000595717 726 ntBASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 AL161729.4-201ENST00000604650 476 ntBASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 AC010133.1-201ENST00000615809 842 ntBASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 AC026241.1-201ENST00000517873 2142 ntBASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.98□□□□□ -1.93
HDDC3Q8N4P3 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.97□□□□□ -1.93
HDDC3Q8N4P3 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.97□□□□□ -1.93
HDDC3Q8N4P3 DYNLT3P1-201ENST00000378574 347 ntBASIC2.97□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 89.6 ms