Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 SNORD50.2-201ENST00000365465 70 ntBASIC5.83□□□□□ -1.48
SH3RF1Q7Z6J0 AC068538.1-201ENST00000376856 336 ntBASIC5.83□□□□□ -1.48
SH3RF1Q7Z6J0 Y_RNA.533-201ENST00000384596 114 ntBASIC5.83□□□□□ -1.48
SH3RF1Q7Z6J0 ENSAP1-201ENST00000392855 326 ntBASIC5.83□□□□□ -1.48
SH3RF1Q7Z6J0 GLULP6-201ENST00000399502 913 ntBASIC5.83□□□□□ -1.48
SH3RF1Q7Z6J0 RPS16P5-201ENST00000406501 404 ntBASIC5.83□□□□□ -1.48
SH3RF1Q7Z6J0 HSPE1P8-201ENST00000406997 288 ntBASIC5.83□□□□□ -1.48
SH3RF1Q7Z6J0 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC5.83□□□□□ -1.48
SH3RF1Q7Z6J0 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC5.83□□□□□ -1.48
SH3RF1Q7Z6J0 RPL30P3-201ENST00000424262 333 ntBASIC5.83□□□□□ -1.48
SH3RF1Q7Z6J0 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC5.83□□□□□ -1.48
SH3RF1Q7Z6J0 HMGB1P27-201ENST00000431429 603 ntBASIC5.83□□□□□ -1.48
SH3RF1Q7Z6J0 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC5.83□□□□□ -1.48
SH3RF1Q7Z6J0 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC5.83□□□□□ -1.48
SH3RF1Q7Z6J0 RPL29P29-201ENST00000448725 423 ntBASIC5.83□□□□□ -1.48
SH3RF1Q7Z6J0 AC073264.2-201ENST00000448886 166 ntBASIC5.83□□□□□ -1.48
SH3RF1Q7Z6J0 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC5.83□□□□□ -1.48
SH3RF1Q7Z6J0 AC133134.1-201ENST00000466800 359 ntBASIC5.83□□□□□ -1.48
SH3RF1Q7Z6J0 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC5.83□□□□□ -1.48
SH3RF1Q7Z6J0 AC113155.1-201ENST00000511141 769 ntBASIC5.83□□□□□ -1.48
SH3RF1Q7Z6J0 Y_RNA.683-201ENST00000516508 93 ntBASIC5.83□□□□□ -1.48
SH3RF1Q7Z6J0 AC087369.1-201ENST00000520775 996 ntBASIC5.83□□□□□ -1.48
SH3RF1Q7Z6J0 MIR3976-201ENST00000606807 139 ntBASIC5.83□□□□□ -1.48
SH3RF1Q7Z6J0 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SH3RF1Q7Z6J0 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
SH3RF1Q7Z6J0 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SH3RF1Q7Z6J0 ZNF299P-201ENST00000406845 1804 ntBASIC5.83□□□□□ -1.48
SH3RF1Q7Z6J0 HSPA8P1-201ENST00000425843 1833 ntBASIC5.83□□□□□ -1.48
SH3RF1Q7Z6J0 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC5.83□□□□□ -1.48
SH3RF1Q7Z6J0 AC097063.1-201ENST00000426714 1797 ntBASIC5.83□□□□□ -1.48
SH3RF1Q7Z6J0 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
SH3RF1Q7Z6J0 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
SH3RF1Q7Z6J0 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC5.82□□□□□ -1.48
SH3RF1Q7Z6J0 RNU6-1266P-201ENST00000362794 105 ntBASIC5.82□□□□□ -1.48
SH3RF1Q7Z6J0 SNORD81.1-201ENST00000363064 77 ntBASIC5.82□□□□□ -1.48
SH3RF1Q7Z6J0 MIR215-201ENST00000384858 110 ntBASIC5.82□□□□□ -1.48
SH3RF1Q7Z6J0 Y_RNA.592-201ENST00000410274 109 ntBASIC5.82□□□□□ -1.48
SH3RF1Q7Z6J0 RNU6-130P-201ENST00000411112 103 ntBASIC5.82□□□□□ -1.48
SH3RF1Q7Z6J0 AL391219.1-201ENST00000422570 483 ntBASIC5.82□□□□□ -1.48
SH3RF1Q7Z6J0 AC068287.1-201ENST00000430283 295 ntBASIC5.82□□□□□ -1.48
SH3RF1Q7Z6J0 AL445305.1-201ENST00000432577 575 ntBASIC5.82□□□□□ -1.48
SH3RF1Q7Z6J0 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC5.82□□□□□ -1.48
SH3RF1Q7Z6J0 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC5.82□□□□□ -1.48
SH3RF1Q7Z6J0 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC5.82□□□□□ -1.48
SH3RF1Q7Z6J0 HMGN2P13-201ENST00000476476 274 ntBASIC5.82□□□□□ -1.48
SH3RF1Q7Z6J0 AC007016.1-201ENST00000512110 244 ntBASIC5.82□□□□□ -1.48
SH3RF1Q7Z6J0 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC5.82□□□□□ -1.48
SH3RF1Q7Z6J0 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC5.82□□□□□ -1.48
SH3RF1Q7Z6J0 MIR15A-201ENST00000607334 83 ntBASIC5.82□□□□□ -1.48
SH3RF1Q7Z6J0 DLEU1_1.1-201ENST00000618107 190 ntBASIC5.82□□□□□ -1.48
SH3RF1Q7Z6J0 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC5.82□□□□□ -1.48
SH3RF1Q7Z6J0 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC5.82□□□□□ -1.48
SH3RF1Q7Z6J0 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
SH3RF1Q7Z6J0 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC5.82□□□□□ -1.48
SH3RF1Q7Z6J0 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC5.82□□□□□ -1.48
SH3RF1Q7Z6J0 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC5.82□□□□□ -1.48
SH3RF1Q7Z6J0 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC5.82□□□□□ -1.48
SH3RF1Q7Z6J0 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
SH3RF1Q7Z6J0 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
SH3RF1Q7Z6J0 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
SH3RF1Q7Z6J0 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
SH3RF1Q7Z6J0 AC009229.4-201ENST00000623854 1947 ntBASIC5.82□□□□□ -1.48
SH3RF1Q7Z6J0 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
SH3RF1Q7Z6J0 AP005435.3-201ENST00000531260 3198 ntBASIC5.81□□□□□ -1.48
SH3RF1Q7Z6J0 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC5.81□□□□□ -1.48
SH3RF1Q7Z6J0 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC5.81□□□□□ -1.48
SH3RF1Q7Z6J0 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC5.81□□□□□ -1.48
SH3RF1Q7Z6J0 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SH3RF1Q7Z6J0 RNY1P5-201ENST00000383890 115 ntBASIC5.81□□□□□ -1.48
SH3RF1Q7Z6J0 RNU6-821P-201ENST00000390995 107 ntBASIC5.81□□□□□ -1.48
SH3RF1Q7Z6J0 RNU6-493P-201ENST00000391321 108 ntBASIC5.81□□□□□ -1.48
SH3RF1Q7Z6J0 AC119751.6-201ENST00000416712 186 ntBASIC5.81□□□□□ -1.48
SH3RF1Q7Z6J0 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC5.81□□□□□ -1.48
SH3RF1Q7Z6J0 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC5.81□□□□□ -1.48
SH3RF1Q7Z6J0 RPL34P20-201ENST00000442771 351 ntBASIC5.81□□□□□ -1.48
SH3RF1Q7Z6J0 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC5.81□□□□□ -1.48
SH3RF1Q7Z6J0 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC5.81□□□□□ -1.48
SH3RF1Q7Z6J0 AC091153.1-201ENST00000466297 402 ntBASIC5.81□□□□□ -1.48
SH3RF1Q7Z6J0 MTND3P25-201ENST00000509243 135 ntBASIC5.81□□□□□ -1.48
SH3RF1Q7Z6J0 AP002392.1-201ENST00000537692 208 ntBASIC5.81□□□□□ -1.48
SH3RF1Q7Z6J0 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SH3RF1Q7Z6J0 MIR6780A-201ENST00000615089 68 ntBASIC5.81□□□□□ -1.48
SH3RF1Q7Z6J0 MIR376A1-201ENST00000616574 68 ntBASIC5.81□□□□□ -1.48
SH3RF1Q7Z6J0 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC5.81□□□□□ -1.48
SH3RF1Q7Z6J0 MIR4275-201ENST00000636486 87 ntBASIC5.81□□□□□ -1.48
SH3RF1Q7Z6J0 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC5.81□□□□□ -1.48
SH3RF1Q7Z6J0 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC5.81□□□□□ -1.48
SH3RF1Q7Z6J0 AL360270.2-201ENST00000562952 5985 ntBASIC5.81□□□□□ -1.48
SH3RF1Q7Z6J0 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
SH3RF1Q7Z6J0 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC5.8□□□□□ -1.48
SH3RF1Q7Z6J0 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
SH3RF1Q7Z6J0 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC5.8□□□□□ -1.48
SH3RF1Q7Z6J0 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
SH3RF1Q7Z6J0 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
SH3RF1Q7Z6J0 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
SH3RF1Q7Z6J0 Y_RNA.122-201ENST00000363331 96 ntBASIC5.8□□□□□ -1.48
SH3RF1Q7Z6J0 RNA5SP223-201ENST00000365174 120 ntBASIC5.8□□□□□ -1.48
SH3RF1Q7Z6J0 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
SH3RF1Q7Z6J0 RNU6-14P-201ENST00000384630 106 ntBASIC5.8□□□□□ -1.48
SH3RF1Q7Z6J0 RNU2-50P-201ENST00000410494 143 ntBASIC5.8□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms