Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 NAP1L4P3-201ENST00000432820 1147 ntBASIC1.12□□□□□ -2.23
TFF3Q07654 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
TFF3Q07654 PSPHP1-201ENST00000450062 261 ntBASIC1.12□□□□□ -2.23
TFF3Q07654 HMGN2P18-201ENST00000450680 270 ntBASIC1.12□□□□□ -2.23
TFF3Q07654 AC034244.1-201ENST00000507687 207 ntBASIC1.12□□□□□ -2.23
TFF3Q07654 AF131216.2-201ENST00000512316 564 ntBASIC1.12□□□□□ -2.23
TFF3Q07654 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC1.12□□□□□ -2.23
TFF3Q07654 RNU6-964P-201ENST00000516524 69 ntBASIC1.12□□□□□ -2.23
TFF3Q07654 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC1.12□□□□□ -2.23
TFF3Q07654 CYCSP26-201ENST00000534107 320 ntBASIC1.12□□□□□ -2.23
TFF3Q07654 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC1.12□□□□□ -2.23
TFF3Q07654 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC1.12□□□□□ -2.23
TFF3Q07654 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC1.12□□□□□ -2.23
TFF3Q07654 SNORD39.2-201ENST00000579995 76 ntBASIC1.12□□□□□ -2.23
TFF3Q07654 MIR3199-1-201ENST00000582434 88 ntBASIC1.12□□□□□ -2.23
TFF3Q07654 CBX3P2-202ENST00000583365 535 ntBASIC1.12□□□□□ -2.23
TFF3Q07654 AC073413.2-201ENST00000604332 360 ntBASIC1.12□□□□□ -2.23
TFF3Q07654 BNIP3P4-201ENST00000604946 565 ntBASIC1.12□□□□□ -2.23
TFF3Q07654 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
TFF3Q07654 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.12□□□□□ -2.23
TFF3Q07654 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.12□□□□□ -2.23
TFF3Q07654 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC1.12□□□□□ -2.23
TFF3Q07654 AC008568.2-201ENST00000623862 2313 ntBASIC1.11□□□□□ -2.23
TFF3Q07654 Y_RNA.112-201ENST00000363250 102 ntBASIC1.11□□□□□ -2.23
TFF3Q07654 RNU4ATAC16P-201ENST00000408512 126 ntBASIC1.11□□□□□ -2.23
TFF3Q07654 AC241520.1-201ENST00000422654 1099 ntBASIC1.11□□□□□ -2.23
TFF3Q07654 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC1.11□□□□□ -2.23
TFF3Q07654 NF1P3-201ENST00000457709 450 ntBASIC1.11□□□□□ -2.23
TFF3Q07654 RPS29P23-201ENST00000458635 123 ntBASIC1.11□□□□□ -2.23
TFF3Q07654 COX6CP14-201ENST00000469580 174 ntBASIC1.11□□□□□ -2.23
TFF3Q07654 AC078857.1-201ENST00000469870 667 ntBASIC1.11□□□□□ -2.23
TFF3Q07654 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC1.11□□□□□ -2.23
TFF3Q07654 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC1.11□□□□□ -2.23
TFF3Q07654 AC008885.2-201ENST00000509506 930 ntBASIC1.11□□□□□ -2.23
TFF3Q07654 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC1.11□□□□□ -2.23
TFF3Q07654 RNU1-61P-201ENST00000516107 151 ntBASIC1.11□□□□□ -2.23
TFF3Q07654 CA1-215ENST00000522389 551 ntTSL 3 BASIC1.11□□□□□ -2.23
TFF3Q07654 AC011604.1-201ENST00000545978 196 ntBASIC1.11□□□□□ -2.23
TFF3Q07654 AC013553.2-201ENST00000604244 589 ntBASIC1.11□□□□□ -2.23
TFF3Q07654 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC1.11□□□□□ -2.23
TFF3Q07654 AC097468.3-201ENST00000607956 456 ntBASIC1.11□□□□□ -2.23
TFF3Q07654 AC022709.1-201ENST00000615967 87 ntBASIC1.11□□□□□ -2.23
TFF3Q07654 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.11□□□□□ -2.23
TFF3Q07654 AC007342.9-201ENST00000623877 1385 ntBASIC1.1□□□□□ -2.23
TFF3Q07654 RNU4-42P-201ENST00000364738 142 ntBASIC1.1□□□□□ -2.23
TFF3Q07654 MOB4-205ENST00000409916 829 ntTSL 3 BASIC1.1□□□□□ -2.23
TFF3Q07654 AL512504.1-201ENST00000415494 778 ntBASIC1.1□□□□□ -2.23
TFF3Q07654 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC1.1□□□□□ -2.23
TFF3Q07654 CKS1BP5-201ENST00000434172 273 ntBASIC1.1□□□□□ -2.23
TFF3Q07654 AC093155.1-201ENST00000440164 826 ntBASIC1.1□□□□□ -2.23
TFF3Q07654 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.1□□□□□ -2.23
TFF3Q07654 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.1□□□□□ -2.23
TFF3Q07654 CALM1P2-201ENST00000452941 448 ntBASIC1.1□□□□□ -2.23
TFF3Q07654 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC1.1□□□□□ -2.23
TFF3Q07654 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
TFF3Q07654 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
TFF3Q07654 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.1□□□□□ -2.23
TFF3Q07654 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC1.1□□□□□ -2.23
TFF3Q07654 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.1□□□□□ -2.23
TFF3Q07654 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC1.1□□□□□ -2.23
TFF3Q07654 OSBPL9P3-201ENST00000534523 595 ntBASIC1.1□□□□□ -2.23
TFF3Q07654 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC1.1□□□□□ -2.23
TFF3Q07654 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC1.1□□□□□ -2.23
TFF3Q07654 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.1□□□□□ -2.23
TFF3Q07654 TRAV28-201ENST00000557548 323 ntBASIC1.1□□□□□ -2.23
TFF3Q07654 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC1.1□□□□□ -2.23
TFF3Q07654 MIR6767-201ENST00000637302 66 ntBASIC1.1□□□□□ -2.23
TFF3Q07654 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC1.1□□□□□ -2.23
TFF3Q07654 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.1□□□□□ -2.23
TFF3Q07654 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC1.09□□□□□ -2.23
TFF3Q07654 RNU6-1080P-201ENST00000383982 107 ntBASIC1.09□□□□□ -2.23
TFF3Q07654 RNU6-1072P-201ENST00000384703 107 ntBASIC1.09□□□□□ -2.23
TFF3Q07654 RNU6-443P-201ENST00000384780 107 ntBASIC1.09□□□□□ -2.23
TFF3Q07654 SLC9B1P2-201ENST00000398120 1184 ntBASIC1.09□□□□□ -2.23
TFF3Q07654 CCNB2P1-201ENST00000399411 1150 ntBASIC1.09□□□□□ -2.23
TFF3Q07654 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC1.09□□□□□ -2.23
TFF3Q07654 MTATP6P4-201ENST00000427725 675 ntBASIC1.09□□□□□ -2.23
TFF3Q07654 CALM1P1-201ENST00000442082 433 ntBASIC1.09□□□□□ -2.23
TFF3Q07654 RPS4XP11-201ENST00000446897 772 ntBASIC1.09□□□□□ -2.23
TFF3Q07654 AC010285.1-201ENST00000470580 392 ntBASIC1.09□□□□□ -2.23
TFF3Q07654 RNA5SP471-201ENST00000516971 106 ntBASIC1.09□□□□□ -2.23
TFF3Q07654 IGKV2D-36-201ENST00000518643 226 ntBASIC1.09□□□□□ -2.23
TFF3Q07654 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC1.09□□□□□ -2.23
TFF3Q07654 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC1.09□□□□□ -2.23
TFF3Q07654 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC1.09□□□□□ -2.23
TFF3Q07654 AC068338.1-201ENST00000565567 176 ntBASIC1.09□□□□□ -2.23
TFF3Q07654 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC1.09□□□□□ -2.23
TFF3Q07654 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC1.09□□□□□ -2.23
TFF3Q07654 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC1.09□□□□□ -2.23
TFF3Q07654 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC1.09□□□□□ -2.23
TFF3Q07654 AC025016.1-201ENST00000616746 682 ntBASIC1.09□□□□□ -2.23
TFF3Q07654 MIR6734-201ENST00000621166 68 ntBASIC1.09□□□□□ -2.23
TFF3Q07654 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC1.09□□□□□ -2.23
TFF3Q07654 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC1.09□□□□□ -2.24
TFF3Q07654 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC1.09□□□□□ -2.24
TFF3Q07654 SNORD114-27-201ENST00000363766 70 ntBASIC1.08□□□□□ -2.24
TFF3Q07654 RNY1-201ENST00000364228 113 ntBASIC1.08□□□□□ -2.24
TFF3Q07654 Y_RNA.354-201ENST00000365448 111 ntBASIC1.08□□□□□ -2.24
TFF3Q07654 MIR520E-201ENST00000384867 87 ntBASIC1.08□□□□□ -2.24
TFF3Q07654 MIR758-201ENST00000390227 88 ntBASIC1.08□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 112.5 ms