Protein–RNA interactions for Protein: P53621

COPA, Coatomer subunit alpha, humanhuman

Predictions only

Length 1,224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPAP53621 AF117829.1-206ENST00000621883 3802 ntBASIC4□□□□□ -1.77
COPAP53621 IPO8P1-201ENST00000455509 3109 ntBASIC4□□□□□ -1.77
COPAP53621 TAB3P1-202ENST00000452645 1634 ntBASIC4□□□□□ -1.77
COPAP53621 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC4□□□□□ -1.77
COPAP53621 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
COPAP53621 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC4□□□□□ -1.77
COPAP53621 SNORD115-47-201ENST00000391226 86 ntBASIC4□□□□□ -1.77
COPAP53621 FGFR1OP2P1-201ENST00000395943 500 ntBASIC4□□□□□ -1.77
COPAP53621 RN7SKP156-201ENST00000410308 342 ntBASIC4□□□□□ -1.77
COPAP53621 RPL21P24-201ENST00000413752 448 ntBASIC4□□□□□ -1.77
COPAP53621 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC4□□□□□ -1.77
COPAP53621 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC4□□□□□ -1.77
COPAP53621 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC4□□□□□ -1.77
COPAP53621 AC024082.2-201ENST00000434771 238 ntBASIC4□□□□□ -1.77
COPAP53621 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC4□□□□□ -1.77
COPAP53621 AC023598.1-201ENST00000472521 361 ntBASIC4□□□□□ -1.77
COPAP53621 AC009646.1-201ENST00000510455 318 ntBASIC4□□□□□ -1.77
COPAP53621 RNU1-61P-201ENST00000516107 151 ntBASIC4□□□□□ -1.77
COPAP53621 AC008489.1-201ENST00000524271 483 ntBASIC4□□□□□ -1.77
COPAP53621 CYCSP30-201ENST00000546447 172 ntBASIC4□□□□□ -1.77
COPAP53621 AC123904.3-201ENST00000547218 814 ntBASIC4□□□□□ -1.77
COPAP53621 SUB1P2-201ENST00000556401 297 ntBASIC4□□□□□ -1.77
COPAP53621 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC4□□□□□ -1.77
COPAP53621 AC234778.2-201ENST00000566241 354 ntBASIC4□□□□□ -1.77
COPAP53621 SNORA59B-202ENST00000578183 701 ntBASIC4□□□□□ -1.77
COPAP53621 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC4□□□□□ -1.77
COPAP53621 AF038458.1-201ENST00000588406 262 ntBASIC4□□□□□ -1.77
COPAP53621 AC012507.3-201ENST00000603556 477 ntBASIC4□□□□□ -1.77
COPAP53621 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC4□□□□□ -1.77
COPAP53621 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC4□□□□□ -1.77
COPAP53621 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC4□□□□□ -1.77
COPAP53621 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
COPAP53621 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC4□□□□□ -1.77
COPAP53621 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
COPAP53621 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4□□□□□ -1.77
COPAP53621 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
COPAP53621 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
COPAP53621 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
COPAP53621 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.99□□□□□ -1.77
COPAP53621 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
COPAP53621 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
COPAP53621 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
COPAP53621 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.99□□□□□ -1.77
COPAP53621 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
COPAP53621 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
COPAP53621 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
COPAP53621 U3.11-201ENST00000364476 212 ntBASIC3.99□□□□□ -1.77
COPAP53621 SNORA73.2-201ENST00000364946 201 ntBASIC3.99□□□□□ -1.77
COPAP53621 SNORA23-201ENST00000365128 182 ntBASIC3.99□□□□□ -1.77
COPAP53621 DEFB109C-201ENST00000382575 264 ntBASIC3.99□□□□□ -1.77
COPAP53621 DEFB109B-201ENST00000382656 264 ntBASIC3.99□□□□□ -1.77
COPAP53621 U8.11-201ENST00000384699 133 ntBASIC3.99□□□□□ -1.77
COPAP53621 U8.12-201ENST00000384701 133 ntBASIC3.99□□□□□ -1.77
COPAP53621 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
COPAP53621 CALM2P3-201ENST00000400429 449 ntBASIC3.99□□□□□ -1.77
COPAP53621 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
COPAP53621 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.99□□□□□ -1.77
COPAP53621 MTND4LP11-201ENST00000422184 280 ntBASIC3.99□□□□□ -1.77
COPAP53621 RPL21P109-201ENST00000422213 475 ntBASIC3.99□□□□□ -1.77
COPAP53621 PPP1R11P2-201ENST00000423543 382 ntBASIC3.99□□□□□ -1.77
COPAP53621 AC005094.1-201ENST00000440420 368 ntBASIC3.99□□□□□ -1.77
COPAP53621 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.99□□□□□ -1.77
COPAP53621 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC3.99□□□□□ -1.77
COPAP53621 FGF7P6-202ENST00000451282 293 ntBASIC3.99□□□□□ -1.77
COPAP53621 snoU13.4-201ENST00000458916 104 ntBASIC3.99□□□□□ -1.77
COPAP53621 U8.18-201ENST00000459285 133 ntBASIC3.99□□□□□ -1.77
COPAP53621 AC008481.1-201ENST00000463278 396 ntBASIC3.99□□□□□ -1.77
COPAP53621 MTCO3P38-201ENST00000468910 766 ntBASIC3.99□□□□□ -1.77
COPAP53621 AL121769.1-201ENST00000469473 401 ntBASIC3.99□□□□□ -1.77
COPAP53621 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3.99□□□□□ -1.77
COPAP53621 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC3.99□□□□□ -1.77
COPAP53621 RNU6-1220P-201ENST00000517126 108 ntBASIC3.99□□□□□ -1.77
COPAP53621 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC3.99□□□□□ -1.77
COPAP53621 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.99□□□□□ -1.77
COPAP53621 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.99□□□□□ -1.77
COPAP53621 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC3.99□□□□□ -1.77
COPAP53621 AC092325.1-201ENST00000566449 554 ntBASIC3.99□□□□□ -1.77
COPAP53621 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC3.99□□□□□ -1.77
COPAP53621 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.99□□□□□ -1.77
COPAP53621 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC3.99□□□□□ -1.77
COPAP53621 AL136363.1-201ENST00000605349 337 ntBASIC3.99□□□□□ -1.77
COPAP53621 AC103710.2-201ENST00000609912 942 ntBASIC3.99□□□□□ -1.77
COPAP53621 AL360181.4-201ENST00000621752 134 ntBASIC3.99□□□□□ -1.77
COPAP53621 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC3.99□□□□□ -1.77
COPAP53621 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.99□□□□□ -1.77
COPAP53621 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
COPAP53621 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
COPAP53621 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
COPAP53621 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
COPAP53621 SNORD56.2-201ENST00000363242 71 ntBASIC3.98□□□□□ -1.77
COPAP53621 RNU6-169P-201ENST00000365336 107 ntBASIC3.98□□□□□ -1.77
COPAP53621 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
COPAP53621 RNU6-456P-201ENST00000384493 107 ntBASIC3.98□□□□□ -1.77
COPAP53621 MIR200C-201ENST00000384980 68 ntBASIC3.98□□□□□ -1.77
COPAP53621 AL138878.1-201ENST00000405131 347 ntBASIC3.98□□□□□ -1.77
COPAP53621 SNORA57.3-201ENST00000411095 141 ntBASIC3.98□□□□□ -1.77
COPAP53621 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC3.98□□□□□ -1.77
COPAP53621 DUTP6-201ENST00000425573 462 ntBASIC3.98□□□□□ -1.77
COPAP53621 MTCO3P45-201ENST00000443036 613 ntBASIC3.98□□□□□ -1.77
COPAP53621 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms