Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC021146.2-201ENST00000504736 556 ntBASIC4.96□□□□□ -1.62
LIG3P49916 AC097473.1-201ENST00000508142 408 ntBASIC4.96□□□□□ -1.62
LIG3P49916 PTP4A1P4-201ENST00000512479 322 ntBASIC4.96□□□□□ -1.62
LIG3P49916 Y_RNA.708-201ENST00000516950 96 ntBASIC4.96□□□□□ -1.62
LIG3P49916 AC087854.1-201ENST00000519706 414 ntBASIC4.96□□□□□ -1.62
LIG3P49916 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.96□□□□□ -1.62
LIG3P49916 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.96□□□□□ -1.62
LIG3P49916 TVP23CP2-201ENST00000571473 623 ntBASIC4.96□□□□□ -1.62
LIG3P49916 AC100830.2-201ENST00000581636 240 ntBASIC4.96□□□□□ -1.62
LIG3P49916 MIR4480-201ENST00000582492 71 ntBASIC4.96□□□□□ -1.62
LIG3P49916 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC4.96□□□□□ -1.62
LIG3P49916 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC4.96□□□□□ -1.62
LIG3P49916 AC083806.3-201ENST00000614016 455 ntBASIC4.96□□□□□ -1.62
LIG3P49916 AC100827.5-201ENST00000615883 426 ntBASIC4.96□□□□□ -1.62
LIG3P49916 AL353748.2-201ENST00000622148 471 ntBASIC4.96□□□□□ -1.62
LIG3P49916 AC091953.3-201ENST00000623220 236 ntBASIC4.96□□□□□ -1.62
LIG3P49916 AC006065.5-201ENST00000623427 349 ntBASIC4.96□□□□□ -1.62
LIG3P49916 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
LIG3P49916 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.96□□□□□ -1.62
LIG3P49916 AC099654.2-201ENST00000433031 1980 ntBASIC4.96□□□□□ -1.62
LIG3P49916 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
LIG3P49916 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.62
LIG3P49916 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC4.96□□□□□ -1.62
LIG3P49916 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.62
LIG3P49916 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.96□□□□□ -1.62
LIG3P49916 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.95□□□□□ -1.62
LIG3P49916 LYST-202ENST00000389794 12985 ntTSL 5 BASIC4.95□□□□□ -1.62
LIG3P49916 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
LIG3P49916 TANK-205ENST00000405852 2155 ntTSL 5 BASIC4.95□□□□□ -1.62
LIG3P49916 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC4.95□□□□□ -1.62
LIG3P49916 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.95□□□□□ -1.62
LIG3P49916 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
LIG3P49916 EFTUD1P2-201ENST00000514817 1603 ntBASIC4.95□□□□□ -1.62
LIG3P49916 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
LIG3P49916 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
LIG3P49916 RNU6-1115P-201ENST00000362490 106 ntBASIC4.95□□□□□ -1.62
LIG3P49916 RNU1-108P-201ENST00000362556 161 ntBASIC4.95□□□□□ -1.62
LIG3P49916 RNU6-463P-201ENST00000384340 107 ntBASIC4.95□□□□□ -1.62
LIG3P49916 LAP3P1-201ENST00000403648 294 ntBASIC4.95□□□□□ -1.62
LIG3P49916 HSPE1P8-201ENST00000406997 288 ntBASIC4.95□□□□□ -1.62
LIG3P49916 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC4.95□□□□□ -1.62
LIG3P49916 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC4.95□□□□□ -1.62
LIG3P49916 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC4.95□□□□□ -1.62
LIG3P49916 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC4.95□□□□□ -1.62
LIG3P49916 PRDX3P3-201ENST00000447765 522 ntBASIC4.95□□□□□ -1.62
LIG3P49916 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC4.95□□□□□ -1.62
LIG3P49916 AC092324.1-201ENST00000468671 324 ntBASIC4.95□□□□□ -1.62
LIG3P49916 AC087884.1-201ENST00000469738 328 ntBASIC4.95□□□□□ -1.62
LIG3P49916 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC4.95□□□□□ -1.62
LIG3P49916 VN1R104P-201ENST00000505115 1009 ntBASIC4.95□□□□□ -1.62
LIG3P49916 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
LIG3P49916 OR51K1P-201ENST00000510214 950 ntBASIC4.95□□□□□ -1.62
LIG3P49916 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC4.95□□□□□ -1.62
LIG3P49916 AL355836.1-201ENST00000555951 870 ntBASIC4.95□□□□□ -1.62
LIG3P49916 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC4.95□□□□□ -1.62
LIG3P49916 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC4.95□□□□□ -1.62
LIG3P49916 AC106900.2-201ENST00000604994 317 ntBASIC4.95□□□□□ -1.62
LIG3P49916 AL121655.1-201ENST00000605811 308 ntBASIC4.95□□□□□ -1.62
LIG3P49916 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
LIG3P49916 AC019206.1-201ENST00000621938 425 ntBASIC4.95□□□□□ -1.62
LIG3P49916 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC4.95□□□□□ -1.62
LIG3P49916 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.95□□□□□ -1.62
LIG3P49916 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
LIG3P49916 AL359922.3-201ENST00000624779 1670 ntBASIC4.95□□□□□ -1.62
LIG3P49916 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC4.95□□□□□ -1.62
LIG3P49916 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
LIG3P49916 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC4.95□□□□□ -1.62
LIG3P49916 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.95□□□□□ -1.62
LIG3P49916 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
LIG3P49916 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
LIG3P49916 AC016588.2-201ENST00000632484 3021 ntBASIC4.94□□□□□ -1.62
LIG3P49916 AL391684.1-202ENST00000641293 1636 ntBASIC4.94□□□□□ -1.62
LIG3P49916 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.94□□□□□ -1.62
LIG3P49916 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC4.94□□□□□ -1.62
LIG3P49916 EOGT-210ENST00000615922 1931 ntBASIC4.94□□□□□ -1.62
LIG3P49916 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
LIG3P49916 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC4.94□□□□□ -1.62
LIG3P49916 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC4.94□□□□□ -1.62
LIG3P49916 Y_RNA.148-201ENST00000363557 117 ntBASIC4.94□□□□□ -1.62
LIG3P49916 RNU6-1074P-201ENST00000383995 104 ntBASIC4.94□□□□□ -1.62
LIG3P49916 RNU6-214P-201ENST00000384130 107 ntBASIC4.94□□□□□ -1.62
LIG3P49916 MIR585-201ENST00000384887 94 ntBASIC4.94□□□□□ -1.62
LIG3P49916 RNU6-1106P-201ENST00000390845 107 ntBASIC4.94□□□□□ -1.62
LIG3P49916 AL356057.3-201ENST00000402607 340 ntBASIC4.94□□□□□ -1.62
LIG3P49916 RPS12P24-201ENST00000412619 387 ntBASIC4.94□□□□□ -1.62
LIG3P49916 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC4.94□□□□□ -1.62
LIG3P49916 AL590632.1-201ENST00000424289 371 ntBASIC4.94□□□□□ -1.62
LIG3P49916 RPL7P37-201ENST00000425095 738 ntBASIC4.94□□□□□ -1.62
LIG3P49916 MTATP6P4-201ENST00000427725 675 ntBASIC4.94□□□□□ -1.62
LIG3P49916 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC4.94□□□□□ -1.62
LIG3P49916 AL359672.1-201ENST00000442302 409 ntBASIC4.94□□□□□ -1.62
LIG3P49916 RPL31P60-201ENST00000478450 367 ntBASIC4.94□□□□□ -1.62
LIG3P49916 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC4.94□□□□□ -1.62
LIG3P49916 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC4.94□□□□□ -1.62
LIG3P49916 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
LIG3P49916 AC026371.1-201ENST00000551867 419 ntBASIC4.94□□□□□ -1.62
LIG3P49916 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC4.94□□□□□ -1.62
LIG3P49916 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC4.94□□□□□ -1.62
LIG3P49916 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC4.94□□□□□ -1.62
LIG3P49916 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC4.94□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 156.2 ms